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Protein Overview: smg-6

General Information:
Name(s) found: smg-6 / CE27003 [WormBase]
Description(s) found:
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  • WBGene00004884 locus:smg-6 status:Confirmed UniProt:Q9BL69 protein_id:CCD68645.1 [WormBase]
  • gi|17556156|ref|NP_497565.1| Suppressor with Morphological effect on Genitalia family member (smg-6) [Caenorhabditis elegans] [NCBI NR]
  • gi|13491293|gb|AAK27881.1| Est (ever shorter telomeres) homolog protein 1, isoform b [Caenorhabditis elegans] [NCBI NR]
  • [wormpep67.fasta]
  • CE27003 WBGene00001339 locus:est-1 status:Confirmed TR:Q9BL69 protein_id:AAK27881.1 [wormpep150.fasta]
  • 27003 WBGene00001339 locus:est-1 status:Confirmed TR:Q9BL69 protein_id:AAK27881.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • putative nuclear protein, with a coiled coil domain (52.3 kD) (3D575) [Caenorhabditis elegans]gi|13491293|gb|AAK27881.1| Est (ever shorter telomeres) homolog protein 1, isoform b [Caenorhabditis elegans] [nrdb_11152004_Chlamydomonas]
  • locus:est-1 status:Confirmed TR:Q9BL69 protein_id:AAK27881.1 [wormpep115.fasta.reversed]
  • CE27003 status:Confirmed TR:Q9BL69 protein_id:AAK27881.1 [wormpep80.hongbin]
  • CE27003 WBGene00004884 locus:smg-6 status:Confirmed UniProt:Q9BL69_CAEEL protein_id:AAK27881.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE27003 WBGene00004884 locus:smg-6 status:Confirmed UniProt:Q9BL69_CAEEL protein_id:AAK27881.1| [wormORF-contam.fasta]
  • EST (Ever Shorter Telomeres) homolog family member (est-1) [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Est (ever shorter telomeres) homolog protein 1, isoform b [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE27003 WBGene00004884 locus:smg-6 status:Confirmed UniProt:Q9BL69 protein_id:AAK27881.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • CE27003 WBGene00004884 locus:smg-6 status:Confirmed UniProt:Q9BL69 protein_id:CCD68645.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • Isoform of Q9BL68, Suppressor with Morphological effect on Genitalia OS=Caenorhabditis elegans GN=smg-6 PE=1 SV=1 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 461 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: embryonic genitalia morphogenesis [IMPLink to PubMed article]
    nuclear-transcribed mRNA catabolic process, nonsense-mediated decay [IGILink to PubMed article]
    RNA interference [IMPLink to PubMed article]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGDTDASSS RTGAPRKPRP EIQIYRPGML RQGGSTKSLS STNEEARPPR PEKLNTTTTT  60
   61 MSGNSRRRSN DTDSVTSRGG SGSTTPDANV INAMNERGGG RNRFEKGYRQ QQRTDGPSNY 120
  121 NSTQSLYDTR QHGGYMEYQG NHRSNHRNNG RYSNQQHQQH RQPFERPGGN HYTRGFNERA 180
  181 SMRGDGAIAR RPQGSRRQRN DSINSTQSEM PPQTGAQLHI DTSFDSASQC GASSNFSMNS 240
  241 LGEAFSFEEM CQNLQNFASM DWSKEVENEF AMQKEQEEEE ERRMEQKLQE AAAQEAQKAA 300
  301 SPRRNNRRNN RRGGGNSRYH PDESDRESSF GGSIAEEKEE EEAEEELKSG ERTPTSVRSG 360
  361 NSYNPRVLYQ RTRGANDENH PKRRDAAVEK KPKEPRRYRG EHDDRDDDAS EYHGTLENHM 420
  421 SSGRLAGRIQ IVQRSQNGTE AGGNRNRQSS EEKPRTYQKR R

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..214] deduced N/A No confident structure predictions are available.
    2 View Details [215..330] deduced N/A No confident structure predictions are available.
    3 View Details [331..461] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle