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View Structure Prediction Details

Protein: smg-6
Organism: Caenorhabditis elegans
Length: 461 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for smg-6.

Description E-value Query
Range
Subject
Range
smg-6 - status:Partially_confirmed UniProt:Q9BL68 protein_id:AAK27880.3
815.0 [0..1] [460..1]

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Predicted Domain #1
Region A:
Residues: [1-214]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGDTDASSS RTGAPRKPRP EIQIYRPGML RQGGSTKSLS STNEEARPPR PEKLNTTTTT  60
   61 MSGNSRRRSN DTDSVTSRGG SGSTTPDANV INAMNERGGG RNRFEKGYRQ QQRTDGPSNY 120
  121 NSTQSLYDTR QHGGYMEYQG NHRSNHRNNG RYSNQQHQQH RQPFERPGGN HYTRGFNERA 180
  181 SMRGDGAIAR RPQGSRRQRN DSINSTQSEM PPQT

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [215-330]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GAQLHIDTSF DSASQCGASS NFSMNSLGEA FSFEEMCQNL QNFASMDWSK EVENEFAMQK  60
   61 EQEEEEERRM EQKLQEAAAQ EAQKAASPRR NNRRNNRRGG GNSRYHPDES DRESSF

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [331-461]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GGSIAEEKEE EEAEEELKSG ERTPTSVRSG NSYNPRVLYQ RTRGANDENH PKRRDAAVEK  60
   61 KPKEPRRYRG EHDDRDDDAS EYHGTLENHM SSGRLAGRIQ IVQRSQNGTE AGGNRNRQSS 120
  121 EEKPRTYQKR R

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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