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View Structure Prediction Details

Protein: smg-6
Organism: Caenorhabditis elegans
Length: 461 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for smg-6.

Description E-value Query
Range
Subject
Range
smg-6 - status:Partially_confirmed UniProt:Q9BL68 protein_id:AAK27880.3
815.0 [0..1] [460..1]

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Predicted Domain #1
Region A:
Residues: [1-214]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGDTDASSS RTGAPRKPRP EIQIYRPGML RQGGSTKSLS STNEEARPPR PEKLNTTTTT  60
   61 MSGNSRRRSN DTDSVTSRGG SGSTTPDANV INAMNERGGG RNRFEKGYRQ QQRTDGPSNY 120
  121 NSTQSLYDTR QHGGYMEYQG NHRSNHRNNG RYSNQQHQQH RQPFERPGGN HYTRGFNERA 180
  181 SMRGDGAIAR RPQGSRRQRN DSINSTQSEM PPQT

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [215-330]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GAQLHIDTSF DSASQCGASS NFSMNSLGEA FSFEEMCQNL QNFASMDWSK EVENEFAMQK  60
   61 EQEEEEERRM EQKLQEAAAQ EAQKAASPRR NNRRNNRRGG GNSRYHPDES DRESSF

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [331-461]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GGSIAEEKEE EEAEEELKSG ERTPTSVRSG NSYNPRVLYQ RTRGANDENH PKRRDAAVEK  60
   61 KPKEPRRYRG EHDDRDDDAS EYHGTLENHM SSGRLAGRIQ IVQRSQNGTE AGGNRNRQSS 120
  121 EEKPRTYQKR R

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle