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Protein Overview: che-2

General Information:
Name(s) found: che-2 / CE25876 [WormBase]
Description(s) found:
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  • WBGene00000484 locus:che-2 status:Confirmed UniProt:G5EGF0 protein_id:CCD61758.1 [WormBase]
  • gi|4468141|emb|CAB38019.1| CHE-2 protein [Caenorhabditis elegans] [NCBI NR]
  • gi|17551248|ref|NP_508106.1| abnormal CHEmotaxis family member (che-2) [Caenorhabditis elegans] [NCBI NR]
  • gi|14574192|gb|AAK68383.1|AC006635_1 Abnormal chemotaxis protein 2 [Caenorhabditis elegans] [NCBI NR]
  • [wormpep67.fasta]
  • CE25876 WBGene00000484 locus:che-2 G-beta-repeats status:Confirmed TR:Q9XZP7 protein_id:AAK68383.1 [wormpep150.fasta]
  • 25876 WBGene00000484 locus:che-2 G-beta-repeats status:Confirmed TR:Q9XZP7 protein_id:AAK68383.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • abnormal CHEmotaxis CHE-2, WD40 protein required for sensory cilia formation and chemotaxis (84.9 kD) (che-2) [Caenorhabditis elegans]gi|14574192|gb|AAK68383.1| Abnormal chemotaxis protein 2 [Caenorhabditis elegans]gi|4468141|emb|CAB38019.1| CHE-2 prote [nrdb_11152004_Chlamydomonas]
  • locus:che-2 G-beta-repeats status:Confirmed TR:Q9XZP7 protein_id:AAK68383.1 [wormpep115.fasta.reversed]
  • CE25876 locus:che-2 G-beta-repeats status:Confirmed [wormpep80.hongbin]
  • CE25876 WBGene00000484 locus:che-2 G-beta-repeats status:Confirmed UniProt:Q9XZP7_CAEEL protein_id:AAK68383.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE25876 WBGene00000484 locus:che-2 G-beta-repeats status:Confirmed UniProt:Q9XZP7_CAEEL protein_id:AAK68383.1| [wormORF-contam.fasta]
  • CHE-2 protein [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Abnormal chemotaxis protein 2 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • F38G1.1 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE25876 WBGene00000484 locus:che-2 G-beta-repeats status:Confirmed UniProt:Q9XZP7 protein_id:AAK68383.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE25876 WBGene00000484 locus:che-2 G-beta-repeats status:Confirmed UniProt:G5EGF0 protein_id:CCD61758.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • CE25876 WBGene00000484 locus:che-2 status:Confirmed UniProt:G5EGF0 protein_id:CCD61758.1 [wormpep246-ecoli-contam.fasta]
  • CHE-2 protein OS=Caenorhabditis elegans GN=che-2 PE=2 SV=1 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 760 amino acids

    Gene Ontology:
    Cellular Component: cilium [IDALink to PubMed article]
    Biological Process: chemotaxis [IMPLink to PubMed article]
    dauer larval development [IGILink to PubMed article]
    cilium assembly [IMPLink to PubMed article]
    negative regulation of transforming growth factor beta receptor signaling pathway [IGILink to PubMed article]
    Molecular Function: structural molecule activity [IMPLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLKLSASRK TRHTEMVCGV GWIGTEAILS AADDHVFLLT NTATNESQQI LNMPETFFPT  60
   61 SLHIFPRSQT KGGQNDVFAV STSDGKINIL SRNGKVENMV DAHNGAALCA RWNSDGTGLL 120
  121 SSGEDGFVKM WSRSGMLRSV LAQFATAVYC VAWDSTSSNV LYCNADHCYI KSLKMQVAPI 180
  181 KWKAHDGIIL CCDWNPTSDL IVTGGEDLKF KVWDGFGQIL FNSSVHDYPI TSISWNTDGT 240
  241 LFAVGSHNIL RLCDKSGWSH SLEKMNAGSV MALSWSPDGT QLAVGTAAGL VFHAHIIDKR 300
  301 LTYEEFEIVQ TQKTVIEVRD VSSEVSRETL ETKERISKIA ILYKYLIVVT SSHIYIYSSK 360
  361 NWNTPTMIEY NERTVNIIVQ CEKIFLVSDG MTITIFTYEG RKLINLNPPG QVMALLDERK 420
  421 IDLANDTLVV RDRADNKVLH FFDPTTGKAQ GDGNLKHEHD IVELTVNQCG PLNDRNVAFR 480
  481 DQIGAVHIAM VKTFGVSQRM VKIGSLVEQL VFNDVTNMLC GISEGKIAVW PLPNVAFHDR 540
  541 NLLQKSLIQK NIGSVGKFPQ LANFAGNTIV IRKSDGCLLP TGILPFYGTL ITMASQSKWD 600
  601 QAIRLCRSIG NDTMWATFAG LAVLHKNMIV MEIAYAALED DEKVSLINEI KDKTDKETRQ 660
  661 AMQVVLTGKL ADADVLLERS GLSFRSLMLN IQMFKWKRAL ELGLKNKQWL EIVMGYREKY 720
  721 LKNCGQKETD PLFLKHMSEV EIDWVHIREL IAAEKAKGNN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..93] PSI-BLAST 69.522879 No description for 2gnqA was found.
    2 View Details [94..468] PSI-BLAST 12.30103 Surface layer protein
    3 View Details [469..582] MSA 3.391996 View MSA. No confident structure predictions are available.
    4 View Details [583..760] FFAS03 1.14 Neutrophil cytosolic factor 2 (NCF-2, p67-phox)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  1.00272437879076 bayes_pls_golite062009
  • protein binding
    		•  0.165161259478554 bayes_pls_golite062009
    3 No functions predicted.
    4
    Term Confidence Notes
  • binding
    		•  1.74713726824402 bayes_pls_golite062009
  • protein binding
    		•  1.257655182369 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle