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Protein Overview: soc-2

General Information:
Name(s) found: soc-2 / CE25736 [WormBase]
Description(s) found:
Found 24 descriptions.
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  • WBGene00004929 locus:soc-2 Leucine-rich repeat protein soc-2 status:Confirmed UniProt:Q22875 protein_id:CCD61151.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 559 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: muscle organ development [IMPLink to PubMed article]
    nematode larval development [IMPLink to PubMed article]
    fibroblast growth factor receptor signaling pathway [IGILink to PubMed article]
    regulation of cell projection organization [IMPLink to PubMed article]
    organ morphogenesis [IMPLink to PubMed article]
    Molecular Function: protein binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METSKEFEFR PAKETSRSKS PGGIVGRLSN FARNKARHSL SEKGSNSVGG SGGAGFDKPR  60
   61 KDLLKEFHKC KEAQDQRLDL SSIEITSIPS PIKELTQLTE LFLYKNKLTC LPTEIGQLVN 120
  121 LKKLGLSENA LTSLPDSLAS LESLETLDLR HNKLTEVPSV IYKIGSLETL WLRYNRIVAV 180
  181 DEQIGNLSKL KMLDVRENKI RELPSAIGKL TSLVVCLVSY NHLTRVPEEI GDCHSLTQLD 240
  241 LQHNDLSELP YSIGKLVNLV RIGIRYNKIR CIPSELESCQ QLEEFIVESN HLQLLPPNLL 300
  301 TMLPKIHTVN LSRNELTAFP AGGPQQFVST VTINMEHNQI SKIPIGIFSK ATRLTKLNLK 360
  361 ENELVSLPLD MGSWTSITEL NLSTNQLKVL PEDIEKLVNL EILVLSNNQL KKLPNQIGNL 420
  421 NKLRELDLEE NELETVPTEI GFLQHLTKLW VQSNKILTLP RSIGNLCSLQ DLRLGENNLT 480
  481 AIPEEIGHLD SLKSLYLNDN SSLHNLPFEL ALCQSLEIMS IENSPLSQIP PEITAGGPSL 540
  541 VIQYLKMQGP YRGVVMNSQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..559] PSI-BLAST 42.69897 The molecular structure of toll-like receptor 3 ligand binding domain


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle