| Protein: | soc-2 |
| Organism: | Caenorhabditis elegans |
| Length: | 559 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for soc-2.
| Description | E-value | Query Range |
Subject Range |
|
|
436.0 | [0..1] | [554..91] |
|
Region A: Residues: [1-559] |
1 11 21 31 41 51
| | | | | |
1 METSKEFEFR PAKETSRSKS PGGIVGRLSN FARNKARHSL SEKGSNSVGG SGGAGFDKPR 60
61 KDLLKEFHKC KEAQDQRLDL SSIEITSIPS PIKELTQLTE LFLYKNKLTC LPTEIGQLVN 120
121 LKKLGLSENA LTSLPDSLAS LESLETLDLR HNKLTEVPSV IYKIGSLETL WLRYNRIVAV 180
181 DEQIGNLSKL KMLDVRENKI RELPSAIGKL TSLVVCLVSY NHLTRVPEEI GDCHSLTQLD 240
241 LQHNDLSELP YSIGKLVNLV RIGIRYNKIR CIPSELESCQ QLEEFIVESN HLQLLPPNLL 300
301 TMLPKIHTVN LSRNELTAFP AGGPQQFVST VTINMEHNQI SKIPIGIFSK ATRLTKLNLK 360
361 ENELVSLPLD MGSWTSITEL NLSTNQLKVL PEDIEKLVNL EILVLSNNQL KKLPNQIGNL 420
421 NKLRELDLEE NELETVPTEI GFLQHLTKLW VQSNKILTLP RSIGNLCSLQ DLRLGENNLT 480
481 AIPEEIGHLD SLKSLYLNDN SSLHNLPFEL ALCQSLEIMS IENSPLSQIP PEITAGGPSL 540
541 VIQYLKMQGP YRGVVMNSQ
|
| Detection Method: |  |
| Confidence: | 42.69897 |
| Match: | 2a0zA |
| Description: | The molecular structure of toll-like receptor 3 ligand binding domain |
Matching Structure (courtesy of the PDB): |
|
