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Protein Overview: pgl-1

General Information:
Name(s) found: pgl-1 / CE25689 [WormBase]
Description(s) found:
Found 23 descriptions.
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  • WBGene00003992 locus:pgl-1 P granule abnormality protein 1 status:Confirmed UniProt:Q9TZQ3 protein_id:CCD62010.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 730 amino acids

    Gene Ontology:
    Cellular Component: P granule [IDALink to PubMed article]
    Biological Process: oogenesis [IMPLink to PubMed article]
    germ-line stem cell division [IMPLink to PubMed article]
    P granule organization [IMPLink to PubMed article]
    gamete generation [IMPLink to PubMed article]
    reproduction [IMPLink to PubMed article]
    Molecular Function: RNA binding [ISSLink to PubMed article]
    protein self-association [IPILink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEANKREIVD FGGLRSYFFP NLAHYITKND EELFNNTSQA NKLAAFVLGA SKDAPGDEDI  60
   61 LEMILPNDAN AAVIAAGMDV CLLLGDKFRP KFDAAAEKLS GLGHAHDLVS VIDDDKKLGM 120
  121 LARKAKLKKT EDAKILQALL KVIAIDDAAE KFVELTELVS QLDLDFDVYV LTKILGLISE 180
  181 ETSDEVDIIR DNVVNAFDSC KPLLKQLMLD GPKSEPADPF ISLLMDPLEE SVGKVVNHIA 240
  241 QLFEEASKNE GDESLVLRSQ LGYQLFFLIV RSLADGKREV SKKILSGIPT SVRAEVFPGL 300
  301 QRSVYKSAVF LGNHIIQVLL GSKKSFEDWD VVGVAKDLES AWKRRAIAEL IKKFQVSILE 360
  361 QCFDKPVPLI PQSPLNNDAV IDNVNKALQF ALWLTEFYGS ENETEALGEL RFLDSTSKNL 420
  421 LVDSFKKFVQ GINSKTHVTR IVESLEKCCL SDTPSGRKSN VQPSTSQQQD SAYTKEEMTT 480
  481 VHNTYSVNTK AQVLNGLSDT NSSGLLVDSK DSLSLQEISC DEVDSSTLLS SSRNIGEGVT 540
  541 VKAVDPVPEK VNDAQQQQTV NEIEMASDAN QDTSSSASPE VAPSFSTDGW DSPTKSVALP 600
  601 PGMQQIDEEE TTVADKDSTP QPQARAETAW GSGDATPMPL PAPTNQYKVS GFGEAKVAKG 660
  661 FGQFAPTSSA YGGGGGRGGY GGGDRGGRGG YGGDRGGRGG YGGGDRGGRG GYGGDRGRGG 720
  721 YGGRGGRGGF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run knl-1 No Comments Cheeseman, I.M., et al. (2004)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..213] deduced N/A No confident structure predictions are available.
    2 View Details [214..370] deduced N/A No confident structure predictions are available.
    3 View Details [371..430] MSA 1.008987 View MSA. No confident structure predictions are available.
    4 View Details [431..670] deduced N/A No confident structure predictions are available.
    5 View Details [671..730] MSA 6.008992 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle