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View Structure Prediction Details

Protein: pgl-1
Organism: Caenorhabditis elegans
Length: 730 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pgl-1.

Description E-value Query
Range
Subject
Range
pgl-1 - status:Partially_confirmed UniProt:Q304E5 protein_id:ABB51171.1
1140.0 [0..1] [670..42]

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Predicted Domain #1
Region A:
Residues: [1-213]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEANKREIVD FGGLRSYFFP NLAHYITKND EELFNNTSQA NKLAAFVLGA SKDAPGDEDI  60
   61 LEMILPNDAN AAVIAAGMDV CLLLGDKFRP KFDAAAEKLS GLGHAHDLVS VIDDDKKLGM 120
  121 LARKAKLKKT EDAKILQALL KVIAIDDAAE KFVELTELVS QLDLDFDVYV LTKILGLISE 180
  181 ETSDEVDIIR DNVVNAFDSC KPLLKQLMLD GPK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [214-370]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SEPADPFISL LMDPLEESVG KVVNHIAQLF EEASKNEGDE SLVLRSQLGY QLFFLIVRSL  60
   61 ADGKREVSKK ILSGIPTSVR AEVFPGLQRS VYKSAVFLGN HIIQVLLGSK KSFEDWDVVG 120
  121 VAKDLESAWK RRAIAELIKK FQVSILEQCF DKPVPLI

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [371-430]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PQSPLNNDAV IDNVNKALQF ALWLTEFYGS ENETEALGEL RFLDSTSKNL LVDSFKKFVQ  60
   61 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [431-670]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GINSKTHVTR IVESLEKCCL SDTPSGRKSN VQPSTSQQQD SAYTKEEMTT VHNTYSVNTK  60
   61 AQVLNGLSDT NSSGLLVDSK DSLSLQEISC DEVDSSTLLS SSRNIGEGVT VKAVDPVPEK 120
  121 VNDAQQQQTV NEIEMASDAN QDTSSSASPE VAPSFSTDGW DSPTKSVALP PGMQQIDEEE 180
  181 TTVADKDSTP QPQARAETAW GSGDATPMPL PAPTNQYKVS GFGEAKVAKG FGQFAPTSSA 240
  241 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [671-730]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YGGGGGRGGY GGGDRGGRGG YGGDRGGRGG YGGGDRGGRG GYGGDRGRGG YGGRGGRGGF  60
   61 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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