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Protein Overview: uaf-1

General Information:
Name(s) found: uaf-1 / CE25626 [WormBase]
Description(s) found:
Found 17 descriptions.
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  • WBGene00006697 locus:uaf-1 Splicing factor U2AF 65 kDa subunit status:Confirmed UniProt:P90978 protein_id:CCD62279.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 143 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEALink to PubMed article]
    spliceosomal complex [ISSLink to PubMed article]
    Biological Process: embryonic development [IMPLink to PubMed article]
    hermaphrodite genitalia development [IMPLink to PubMed article]
    nematode larval development [IMPLink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed article]
    mRNA processing [IEALink to PubMed article]
    reproduction [IMPLink to PubMed article]
    Molecular Function: nucleic acid binding [IEALink to PubMed article]
    RNA binding [IDALink to PubMed article][IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQLGDKQLVV QLACANQQRH NTNLPNSASA IAGIDLSQGA GRATEILCLM NMVTEDELKA  60
   61 DDEYEEILED VRDECSKYGI VRSLEIPRPY EDHPVPGVGK VFVEFASTSD CQRAQAALTG 120
  121 RKFANRTVVT SYYDVDKYHN RQF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..143] PSI-BLAST 20.0 Splicing factor U2AF 65 KDa subunit

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.950788308762215 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.29562225149076 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle