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Protein Overview: CE25544

General Information:
Name(s) found: CE25544 [WormBase]
Description(s) found:
Found 16 descriptions.
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  • WBGene00022062 status:Partially_confirmed UniProt:Q95XT8 protein_id:CCD73141.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 327 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEALink to PubMed article]
    Biological Process: regulation of transcription, DNA-dependent [IEALink to PubMed article]
    Molecular Function: transcription factor activity [IEALink to PubMed article]
    steroid hormone receptor activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIYVNHSFQ VSQGDRYRFP SNQFGYGLSN CSPYFLQDFT HVLNRYMQLE AYCDAVDDLT  60
   61 GALPKTGLAP NEPDLFQALF FPRSIAPRTP MNPVASTQMT EETLSAMWFR LVAHYFEWLA 120
  121 GISELQYLSD QDKLRLAVCQ LCKVVCFSVV YANYHFKNDE NDDLLFFGSG FYWDPARGND 180
  181 PLMDDYCQEM KRIVNQVVYP LRKVGMVKEE FVLVKLILLF DCTSLMGLSD EGLEFTRSMC 240
  241 NKYRTTLSQY VRCHIEELAD TEGWSQNEID RCSMDRIKNL LDLPIGVEKL GKLDDDSLAE 300
  301 MVESNYGGMR GTLQQQIHTE SRKVRNR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..327] PSI-BLAST 56.30103 LIGAND-BINDING DOMAIN OF THE HUMAN NUCLEAR RECEPTOR RXR-ALPHA

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  1.15996699473685 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.46162010671465 bayes_pls_golite062009
  • protein binding
    		•  0.33427459029264 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.15459949087509 bayes_pls_golite062009
  • DNA binding
    		•  0.14395376162921 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle