| Protein: | CE25544 |
| Organism: | Caenorhabditis elegans |
| Length: | 327 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE25544.
| Description | E-value | Query Range |
Subject Range |
|
|
256.0 | [0..10] | [323..301] |
|
Region A: Residues: [1-327] |
1 11 21 31 41 51
| | | | | |
1 MAIYVNHSFQ VSQGDRYRFP SNQFGYGLSN CSPYFLQDFT HVLNRYMQLE AYCDAVDDLT 60
61 GALPKTGLAP NEPDLFQALF FPRSIAPRTP MNPVASTQMT EETLSAMWFR LVAHYFEWLA 120
121 GISELQYLSD QDKLRLAVCQ LCKVVCFSVV YANYHFKNDE NDDLLFFGSG FYWDPARGND 180
181 PLMDDYCQEM KRIVNQVVYP LRKVGMVKEE FVLVKLILLF DCTSLMGLSD EGLEFTRSMC 240
241 NKYRTTLSQY VRCHIEELAD TEGWSQNEID RCSMDRIKNL LDLPIGVEKL GKLDDDSLAE 300
301 MVESNYGGMR GTLQQQIHTE SRKVRNR
|
| Detection Method: |  |
| Confidence: | 56.30103 |
| Match: | 1lbdA |
| Description: | LIGAND-BINDING DOMAIN OF THE HUMAN NUCLEAR RECEPTOR RXR-ALPHA |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.15996699473685 | bayes_pls_golite062009 |
| transcription regulator activity | 0.46162010671465 | bayes_pls_golite062009 |
| protein binding | 0.33427459029264 | bayes_pls_golite062009 |
| nucleic acid binding | 0.15459949087509 | bayes_pls_golite062009 |
| DNA binding | 0.14395376162921 | bayes_pls_golite062009 |
