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Protein Overview: nhr-117

General Information:
Name(s) found: nhr-117 / CE24906 [WormBase]
Description(s) found:
Found 18 descriptions.
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  • WBGene00003707 locus:nhr-117 status:Confirmed UniProt:Q8MNW2 protein_id:CCD69577.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 435 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEALink to PubMed article]
    Biological Process: regulation of transcription, DNA-dependent [IEALink to PubMed article]
    Molecular Function: transcription factor activity [IEALink to PubMed article]
    zinc ion binding [IEALink to PubMed article]
    steroid hormone receptor activity [IEALink to PubMed article]
    sequence-specific DNA binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQNSIDFCSA SSSTSSNYSS PPAVLDIDQV LEKCQICYQP GHGYHFGAFI CRACAAFFRR  60
   61 CHFSLALDQR KCRLLSGSCQ PNKNGRWFCK KCRFDKCLEL GMTTTNIQYD RDAFKSSASF 120
  121 LKNKSVAKRV ADRVSVPMTV ESALGINPIM IFTYADENKQ FPFIDISQLV DKALSSILTP 180
  181 ISVRKIKKMS NLEQLTQGLD EFQWTQKESV SQIVRLSAND HLNDFQTYMC AAAKWLSYSD 240
  241 RIRNLDDELK IQILQCIWFN WGRLERIATT AKMRNKRKCG KKQFVFSNNI LLDYDEMSSD 300
  301 LSFWSNYTFE EMKYFFIPTE MFYDEVICEM EEVQPDNMET TFIISLMCFH LTGKQFGGQV 360
  361 QEEMDQLQDL LSDELHEYYL KKNMTMYSLR LKQLMKIKEK FLKLRYKRCE KYKIAGIFEA 420
  421 FHTNLSNPEF FMIPA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..88] PSI-BLAST 20.0 No description for 2hanB was found.
    2 View Details [89..435] PSI-BLAST 32.39794 hemipteran ecdysone receptor ligand-binding domain complexed with ponasterone A

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  1.18770607371139 bayes_pls_golite062009
  • protein binding
    		•  0.699012253331291 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.91

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle