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Protein Overview: CE24787

General Information:
Name(s) found: CE24787 [WormBase]
Description(s) found:
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  • WBGene00015486 Uncharacterized protein C05D11.9 status:Confirmed UniProt:Q11188 protein_id:CCD63199.1 [WormBase]
  • gi|21542491|sp|Q11188.2|YPD9_CAEEL RecName: Full=Uncharacterized protein C05D11.9 [NCBI NR]
  • gi|17552030|ref|NP_498408.1| hypothetical protein C05D11.9 [Caenorhabditis elegans] [NCBI NR]
  • gi|15145278|gb|AAB53831.2| Hypothetical protein C05D11.9 [Caenorhabditis elegans] [NCBI NR]
  • Uncharacterized protein C05D11.9 OS=Caenorhabditis elegans GN=C05D11.9 PE=4 SV=2 [Swiss-Prot]
  • [wormpep67.fasta]
  • CE24787 WBGene00015486 status:Confirmed SW:Q11188 protein_id:AAB53831.2 [wormpep150.fasta]
  • 24787 WBGene00015486 status:Partially_confirmed SW:Q11188 protein_id:AAB53831.2 [wormpep130-phg-ecoli-orf-rand.fasta]
  • processing of precursors 1 (3H518) [Caenorhabditis elegans]gi|15145278|gb|AAB53831.2| Hypothetical protein C05D11.9 [Caenorhabditis elegans]gi|21542491|sp|Q11188|YPD9_CAEEL Hypothetical protein C05D11.9 in chromosome III [nrdb_11152004_Chlamydomonas]
  • 24787 WBGene00015486 status:Confirmed SW:Q11188 protein_id:AAB53831.2 [wormpep150-phg-orf-ecoli-rand.fasta]
  • status:Partially_confirmed SW:Q11188 protein_id:AAB53831.2 [wormpep115.fasta.reversed]
  • CE24787 status:Partially_confirmed SW:Q11188 protein_id:AAB53831.2 [wormpep80.hongbin]
  • CE24787 WBGene00015486 status:Confirmed UniProt:YPD9_CAEEL protein_id:AAB53831.2 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE24787 WBGene00015486 status:Confirmed UniProt:YPD9_CAEEL protein_id:AAB53831.2| [wormORF-contam.fasta]
  • C05D11.9 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Hypothetical protein C05D11.9 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Hypothetical protein C05D11.9 [nr-271106-contam.fasta]
  • CE24787 WBGene00015486 status:Confirmed UniProt:Q11188 protein_id:AAB53831.2 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE24787 WBGene00015486 status:Confirmed UniProt:Q11188 protein_id:CCD63199.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • CE24787 WBGene00015486 status:Confirmed UniProt:Q11188 protein_id:CCD63199.1 Uncharacterized protein C05D11.9 [wormpep246-ecoli-contam.fasta]
    • Organism: Caenorhabditis elegans
    Length: 752 amino acids

    Gene Ontology:
    Cellular Component: intracellular [IEALink to PubMed article]
    Biological Process: nematode larval development [IMPLink to PubMed article]
    positive regulation of growth rate [IMPLink to PubMed articleLink to PubMed articleLink to PubMed article]
    post-embryonic body morphogenesis [IMPLink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed article]
    regulation of transcription, DNA-dependent [IEALink to PubMed article]
    RNA processing [IEALink to PubMed article]
    tRNA 5'-leader removal [IEALink to PubMed article]
    growth [IMPLink to PubMed article]
    Molecular Function: transcription factor activity [IEALink to PubMed article]
    ribonuclease P activity [IEALink to PubMed article]
    sequence-specific DNA binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFIEVEKFVE ARTNSIAQLL KAIDNDALVS GEVTKGPRTA AQRLPRHMRR RAMAYDIRRF  60
   61 PRTMREFAAA HLISKHAKKC PSRFARRKSA NSRTKFGRST STKGIWLSTH VWHAKRFRMI 120
  121 QKWGFKLADR SFQRGFRAVL RDSNKNCVIR DRSYYTCVTI QCTDAYSKIS QFSQKGCRGQ 180
  181 SSRDEEEECH QLYMPGKYPF GYIGPARFQR LSGDKVHIWI HPSSKLQFMK ALLEYYNLEK 240
  241 QENTEEDLYK NSEIKVSIDA ENICRFHLSG PKCLSKLRDS IRFVNDEKFS SEHNYFLSVS 300
  301 DSVFQSSRDG EVINLLIEDP RTTWDRKTVL KHKKVNKEAD NERIRVSKFW NKEFREMAIE 360
  361 KRMADSEFHK QNSSKINGVI STEAKVPIIL IIRNEGLKAL DGADILIPEP FAKDFWVSLQ 420
  421 RRGVRASGLR DEYAAHLESK ALYYPLDDVG SEAGRESELA MKKELIEKYL GKPHNRRCKH 480
  481 WSAVSVKYPF EFKWDELSQD WNLSNKPRSE AFVCRDLQKL RIIEEAMKKG SGLEEFQEPG 540
  541 MLIPVKLQFF GRGRPKKYGM VCLPTDDDLI SIRKNRNREI IQTPPEASSQ DSDIVEAMEI 600
  601 EEITVKKNQG FMSLEAAASE KPINLKLLFE ETTKLDDKTT KRKRVNRKKR ESKKRRKIEQ 660
  661 EKRKEEAEVE EVQKLATKYR FSANREIIGR LVAGEQSVLA GHGVGIGYIC ANTLSLIASN 720
  721 YHKSKTVVMV RNSTSKYYHP AYVTILKNAT KI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..102] Pfam 32.79588 No description for PF06978.2 was found. No confident structure predictions are available.
    2 View Details [103..344] PSI-BLAST 36.69897 Crystal Structure of a Component of Glycine Cleavage System: T-protein from Pyrococcus horikoshii OT3 at 1.5 A Resolution
    3 View Details [345..594] FFAS03 2.1 Crystal Structure of a Component of Glycine Cleavage System: T-protein from Pyrococcus horikoshii OT3 at 1.5 A Resolution
    4 View Details [595..752] MSA 1.032973 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  0.088936544296945 bayes_pls_golite062009
    3
    Term Confidence Notes
  • binding
    		•  0.126963500135214 bayes_pls_golite062009
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.80

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle