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Protein Overview: snf-8

General Information:
Name(s) found: snf-8 / CE24742 [WormBase]
Description(s) found:
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  • WBGene00004907 locus:snf-8 Transporter status:Partially_confirmed UniProt:O18300 protein_id:CAA98079.2 [WormBase]
  • pir||T28028 hypothetical protein ZK829.10 - Caenorhabditis elegans [NCBI NR]
  • gi|5824909|emb|CAA98079.2| C. elegans protein ZK829.10, partially confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • gi|17542048|ref|NP_502271.1| Sodium:Neurotransmitter symporter Family family member (snf-8) [Caenorhabditis elegans] [NCBI NR]
  • [wormpep67.fasta]
  • CE24742 WBGene00004907 locus:snf-8 sodium-dependent neurotransmitter symporter like status:Partially_confirmed TR:O18300 protein_id:CAA98079.2 [wormpep150.fasta]
  • 24742 WBGene00004907 locus:snf-8 sodium-dependent neurotransmitter symporter like status:Partially_confirmed TR:O18300 protein_id:CAA98079.2 [wormpep130-phg-ecoli-orf-rand.fasta]
  • sodium:neurotransmitter symporter family member (snf-8) [Caenorhabditis elegans]gi|5824909|emb|CAA98079.2| Hypothetical protein ZK829.10 [Caenorhabditis elegans]gi|7511338|pir||T28028 hypothetical protein ZK829.10 - Caenorhabditis elegans [nrdb_11152004_Chlamydomonas]
  • locus:snf-8 sodium-dependent neurotransmitter symporter like status:Partially_confirmed TR:O18300 protein_id:CAA98079.2 [wormpep115.fasta.reversed]
  • CE24742 locus:snf-8 sodium-dependent neurotransmitter symporter like status:Partially_confirmed TR:O18300 protein_id:CAA98079.2 [wormpep80.hongbin]
  • CE24742 WBGene00004907 locus:snf-8 sodium-dependent neurotransmitter symporter like status:Partially_confirmed UniProt:O18300_CAEEL protein_id:CAA98079.2 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE24742 WBGene00004907 locus:snf-8 sodium-dependent neurotransmitter symporter like status:Partially_confirmed UniProt:O18300_CAEEL protein_id:CAA98079.2| [wormORF-contam.fasta]
  • Sodium:Neurotransmitter symporter Family family member (snf-8) [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Hypothetical protein ZK829.10 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE24742 WBGene00004907 locus:snf-8 sodium-dependent neurotransmitter symporter like status:Partially_confirmed UniProt:O18300 protein_id:CAA98079.2 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
    • Organism: Caenorhabditis elegans
    Length: 669 amino acids

    Gene Ontology:
    Cellular Component: integral to plasma membrane [IEALink to PubMed article]
    membrane [IEALink to PubMed article]
    Biological Process: neurotransmitter transport [IEALink to PubMed article]
    Molecular Function: neurotransmitter:sodium symporter activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKPKKEVRKD ALPRPEFKSW YDLLFSVVNL CIGLSNFLIF LAKVHEYRGG AFILAYGLIL  60
   61 IMLGYPVLYL ELIIGQFHRC SPWIFIRRCA PILQGFGFMA LVSAVTILYP YQYSVARAFK 120
  121 FLLSLARYRS QDMPWSTCGN WWNTETGHIV FQNKCVNETK IKMEAVESAE IQYLRNVIHR 180
  181 IGVSHMSFTN FNYGIAYSIF IIWLTISFVQ NRVNTRTTPL IYIPTVFAFL ICHFLLVRSL 240
  241 HLDGAIEGVQ EMLRIEWAEL LYSKIWIDAL NLVVQSLSIG IGGHTVMASF APPEKNTFRV 300
  301 ATLAVILDTG LSIIISATVY SILGYTRFIL GRKSVYDLTV LPNGLLLTHS TFPVLLRQVA 360
  361 ANSWLWVFLY YSTLVVVGWK SCALIMKTIT VTIADIFNIK MKTYFFDCLC IFVSMVIATS 420
  421 GLFLCFESGP LYLTMIQDIQ TVATGIFITA ELFIVLELYG LDTIYGDIHE LMGQPSNDQW 480
  481 SRAYTWPIWK WRWTTAPAFS IIFAVSAFFR PFPSPENDLE YYYFYDLIQF FILFFVIVSP 540
  541 FGFAYYSYLK MWHHFEKFEK EKQFNSSILW HRQLHLRSWN RIEKEMSEEQ RNFAHQHLPE 600
  601 KESEDLEEFW KLVYRPFFET PSHETVMMPI IPKSKEIVKP RQASKKRSKK RSKKDEFLTF 660
  661 ETYYKEKGK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..552] PSI-BLAST 61.30103 Crystal structure of LEUTAA, a bacterial homolog of Na+/Cl--dependent neurotransmitter transporters
    2 View Details [553..669] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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