| Protein: | snf-8 |
| Organism: | Caenorhabditis elegans |
| Length: | 669 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for snf-8.
| Description | E-value | Query Range |
Subject Range |
|
|
585.0 | [0..3] | [602..287] |
|
Region A: Residues: [1-552] |
1 11 21 31 41 51
| | | | | |
1 MKPKKEVRKD ALPRPEFKSW YDLLFSVVNL CIGLSNFLIF LAKVHEYRGG AFILAYGLIL 60
61 IMLGYPVLYL ELIIGQFHRC SPWIFIRRCA PILQGFGFMA LVSAVTILYP YQYSVARAFK 120
121 FLLSLARYRS QDMPWSTCGN WWNTETGHIV FQNKCVNETK IKMEAVESAE IQYLRNVIHR 180
181 IGVSHMSFTN FNYGIAYSIF IIWLTISFVQ NRVNTRTTPL IYIPTVFAFL ICHFLLVRSL 240
241 HLDGAIEGVQ EMLRIEWAEL LYSKIWIDAL NLVVQSLSIG IGGHTVMASF APPEKNTFRV 300
301 ATLAVILDTG LSIIISATVY SILGYTRFIL GRKSVYDLTV LPNGLLLTHS TFPVLLRQVA 360
361 ANSWLWVFLY YSTLVVVGWK SCALIMKTIT VTIADIFNIK MKTYFFDCLC IFVSMVIATS 420
421 GLFLCFESGP LYLTMIQDIQ TVATGIFITA ELFIVLELYG LDTIYGDIHE LMGQPSNDQW 480
481 SRAYTWPIWK WRWTTAPAFS IIFAVSAFFR PFPSPENDLE YYYFYDLIQF FILFFVIVSP 540
541 FGFAYYSYLK MW
|
| Detection Method: |  |
| Confidence: | 61.30103 |
| Match: | 2a65A |
| Description: | Crystal structure of LEUTAA, a bacterial homolog of Na+/Cl--dependent neurotransmitter transporters |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [553-669] |
1 11 21 31 41 51
| | | | | |
1 HHFEKFEKEK QFNSSILWHR QLHLRSWNRI EKEMSEEQRN FAHQHLPEKE SEDLEEFWKL 60
61 VYRPFFETPS HETVMMPIIP KSKEIVKPRQ ASKKRSKKRS KKDEFLTFET YYKEKGK
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
