YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	snf-8
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	19	0.96
Transmembrane Helix	20	42	0.94
Non-Cytoplasmic	43	50	0.81
Transmembrane Helix	51	73	0.89
Cytoplasmic	74	89	0.86
Transmembrane Helix	90	111	0.89
Non-Cytoplasmic	112	190	0.91
Transmembrane Helix	191	209	0.90
Cytoplasmic	210	219	0.72
Transmembrane Helix	220	237	0.95
Non-Cytoplasmic	238	266	0.80
Transmembrane Helix	267	288	0.74
Cytoplasmic	289	299	0.60
Transmembrane Helix	300	323	0.86
Non-Cytoplasmic	324	363	0.72
Transmembrane Helix	364	384	0.85
Cytoplasmic	385	403	0.82
Transmembrane Helix	404	426	0.92
Non-Cytoplasmic	427	440	0.81
Transmembrane Helix	441	461	0.85
Cytoplasmic	462	490	0.89
Transmembrane Helix	491	509	0.96
Non-Cytoplasmic	510	526	0.86
Transmembrane Helix	527	549	0.91
Cytoplasmic	550	669	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKPKKEVRKD ALPRPEFKSW YDLLFSVVNL CIGLSNFLIF LAKVHEYRGG AFILAYGLIL  60
   61 IMLGYPVLYL ELIIGQFHRC SPWIFIRRCA PILQGFGFMA LVSAVTILYP YQYSVARAFK 120
  121 FLLSLARYRS QDMPWSTCGN WWNTETGHIV FQNKCVNETK IKMEAVESAE IQYLRNVIHR 180
  181 IGVSHMSFTN FNYGIAYSIF IIWLTISFVQ NRVNTRTTPL IYIPTVFAFL ICHFLLVRSL 240
  241 HLDGAIEGVQ EMLRIEWAEL LYSKIWIDAL NLVVQSLSIG IGGHTVMASF APPEKNTFRV 300
  301 ATLAVILDTG LSIIISATVY SILGYTRFIL GRKSVYDLTV LPNGLLLTHS TFPVLLRQVA 360
  361 ANSWLWVFLY YSTLVVVGWK SCALIMKTIT VTIADIFNIK MKTYFFDCLC IFVSMVIATS 420
  421 GLFLCFESGP LYLTMIQDIQ TVATGIFITA ELFIVLELYG LDTIYGDIHE LMGQPSNDQW 480
  481 SRAYTWPIWK WRWTTAPAFS IIFAVSAFFR PFPSPENDLE YYYFYDLIQF FILFFVIVSP 540
  541 FGFAYYSYLK MWHHFEKFEK EKQFNSSILW HRQLHLRSWN RIEKEMSEEQ RNFAHQHLPE 600
  601 KESEDLEEFW KLVYRPFFET PSHETVMMPI IPKSKEIVKP RQASKKRSKK RSKKDEFLTF 660
  661 ETYYKEKGK