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Protein Overview: pde-6

General Information:
Name(s) found: pde-6 / CE23151 [WormBase]
Description(s) found:
Found 21 descriptions.
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  • WBGene00022389 locus:pde-6 Probable 3',5'-cyclic phosphodiesterase pde-6 status:Partially_confirmed UniProt:Q9N2V9 protein_id:CCD73546.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 760 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: signal transduction [IEALink to PubMed article]
    Molecular Function: catalytic activity [IEALink to PubMed article]
    signal transducer activity [IEALink to PubMed article]
    3',5'-cyclic-nucleotide phosphodiesterase activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDRSGVGGE EGEKSVLGAS AHSQAGRRQQ HTPAARRGAQ RAPAATAAAA SRPVFAMRWC  60
   61 CGGSYSENGG GGGGSRGAPP TPLLTVAATS SSTAHDTFGP MQVKMLKTAV IVTEGTGESV 120
  121 LLDSLRASGW ICTVSFPTQA TSDVESICPL AVFIDLRVPH PSQIAKDVSS VSTEEVLIVS 180
  181 IAEKHISEKR RRALAQSNII HHVTWNTRDV VLFDYVGRLA NRIRALPALF AVLDETDQAV 240
  241 EICDEQRVVQ YVNRAYENVT GCIRSEVIGQ PESEMRRKSL PRARGEEERR RSCDWKFIRV 300
  301 PFANNSQFVY MKRSNTTGDT AAIFRDVSLK SLKSQTGGIE APISEVLTML RDVSARVDGE 360
  361 PAQTIKDAMK VLSSHELYAP SINRFRDADR IATQYYDGLI RLHHPARQRK RSVVDAHREK 420
  421 RGSHGERRRV SADVKNALEN DNCWKFDILH LEKVSDHHAL SQVGMKVFER WKVCDVLGCS 480
  481 DDLLHRWILS IEAHYHAGNT YHNATHAADV LQATSFFLDS PSVAVHVNES HAVAALLAAA 540
  541 VHDLDHPGRG NAYLINTRQS LAILYNDNSI LENHHIALAF QLTLQHNANV NIFSSLSREE 600
  601 FIQMRHAMVE MVLATDISRH FEYLAKFNKM HVTDVPEEQR DTNSLTICDM LVKCADISNP 660
  661 AREWGLCQRW AHRIVEEYFE QTREEKEKGL PVTMEVFDRN TCNVPITQCG FIDMFAREAF 720
  721 ATFTEFAKLG ELSDQLESNY EKWKVMTSQW TPTHNTNLVL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..160] deduced N/A No confident structure predictions are available.
    2 View Details [161..357] PSI-BLAST 10.045757 No description for 2pr5A was found.
    3 View Details [358..417] deduced N/A No confident structure predictions are available.
    4 View Details [418..760] PSI-BLAST 92.69897 Catalytic domain of cyclic nucleotide phosphodiesterase pde4d

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3 No functions predicted.
    4
    Term Confidence Notes
  • catalytic activity
    		•  0.540422983488568 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle