| Protein: | pde-6 |
| Organism: | Caenorhabditis elegans |
| Length: | 760 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pde-6.
| Description | E-value | Query Range |
Subject Range |
|
|
470.0 | [0..39] | [755..11] |
|
Region A: Residues: [1-160] |
1 11 21 31 41 51
| | | | | |
1 MGDRSGVGGE EGEKSVLGAS AHSQAGRRQQ HTPAARRGAQ RAPAATAAAA SRPVFAMRWC 60
61 CGGSYSENGG GGGGSRGAPP TPLLTVAATS SSTAHDTFGP MQVKMLKTAV IVTEGTGESV 120
121 LLDSLRASGW ICTVSFPTQA TSDVESICPL AVFIDLRVPH
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [161-357] |
1 11 21 31 41 51
| | | | | |
1 PSQIAKDVSS VSTEEVLIVS IAEKHISEKR RRALAQSNII HHVTWNTRDV VLFDYVGRLA 60
61 NRIRALPALF AVLDETDQAV EICDEQRVVQ YVNRAYENVT GCIRSEVIGQ PESEMRRKSL 120
121 PRARGEEERR RSCDWKFIRV PFANNSQFVY MKRSNTTGDT AAIFRDVSLK SLKSQTGGIE 180
181 APISEVLTML RDVSARV
|
| Detection Method: | |
| Confidence: | 10.045757 |
| Match: | 2pr5A |
| Description: | No description for 2pr5A was found. |
|
Region A: Residues: [358-417] |
1 11 21 31 41 51
| | | | | |
1 DGEPAQTIKD AMKVLSSHEL YAPSINRFRD ADRIATQYYD GLIRLHHPAR QRKRSVVDAH 60
61
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [418-760] |
1 11 21 31 41 51
| | | | | |
1 REKRGSHGER RRVSADVKNA LENDNCWKFD ILHLEKVSDH HALSQVGMKV FERWKVCDVL 60
61 GCSDDLLHRW ILSIEAHYHA GNTYHNATHA ADVLQATSFF LDSPSVAVHV NESHAVAALL 120
121 AAAVHDLDHP GRGNAYLINT RQSLAILYND NSILENHHIA LAFQLTLQHN ANVNIFSSLS 180
181 REEFIQMRHA MVEMVLATDI SRHFEYLAKF NKMHVTDVPE EQRDTNSLTI CDMLVKCADI 240
241 SNPAREWGLC QRWAHRIVEE YFEQTREEKE KGLPVTMEVF DRNTCNVPIT QCGFIDMFAR 300
301 EAFATFTEFA KLGELSDQLE SNYEKWKVMT SQWTPTHNTN LVL
|
| Detection Method: | |
| Confidence: | 92.69897 |
| Match: | 1oynA |
| Description: | Catalytic domain of cyclic nucleotide phosphodiesterase pde4d |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| catalytic activity | 0.540422983488568 | bayes_pls_golite062009 |
