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Protein Overview: clec-73

General Information:
Name(s) found: clec-73 / CE21962 [WormBase]
Description(s) found:
Found 22 descriptions.
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  • WBGene00021579 locus:clec-73 status:Confirmed UniProt:Q9N3W2 protein_id:CCD71963.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 577 amino acids

    Gene Ontology:
    Cellular Component: integral to membrane [IEALink to PubMed article]
    Biological Process: cell adhesion [IEALink to PubMed article]
    Molecular Function: sugar binding [IEALink to PubMed article]
    hyaluronic acid binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTKVVSVWL GFIVSAFFTT SWGLLLNSDE GFEKACKQSG GDYTQRAGND SNTGDICLMT  60
   61 FQAVATDMDA ARDFCNIKAP WRLREAKIDK SQDSIPVIIC DVEATFTCNA GWIQMFGYCF 120
  121 KMSEVHDRYT REKAEQYCKD QAGPSFQGEI AGIHHRYILT PWRSYFTRLQ QFWIRAPETW 180
  181 DEYVIKTDKV DGDNLALSFY DVHPDFSVPQ NAMIKINGKV ELQALCQYKP AITPAEINYM 240
  241 GRRYSEIYYP TVPVKDGIIV RSASSYTRSS NQSDVCKKVL KPYMYSKESQ FFPDPDSMEQ 300
  301 LAKLEPEAYS LMRSPLVSNS VERYRTNRYC QAPSNPHYEV VLGGKKTANF VVEENKIKGK 360
  361 PTCDNMMSVS ISHFKGQAPE FHPMVDSQSL PIWCKLGKVV KYKYKVTPGW TDFRRLNGQV 420
  421 ALHWLSKDKL TFADAAAACE AKGANLAGIN SLKEAEQLGN HVVGANLNNE QFWLGAQRRT 480
  481 ECLENNDWKP PCTRDKIFEW MNNVATDFRS EWWKKNNNLH SPNPSGTGQR CLSFAFGDLW 540
  541 WSYKGHTGFL DDIECHTELR YFCSKMAPFT ECEENCD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..91] deduced N/A No confident structure predictions are available.
    2 View Details [92..280] PSI-BLAST 19.39794 Structural basis for the interactions between tenascins and the C-type lectin domains from lecticans: evidence for a cross-linking role for tenascins
    3 View Details [281..400] deduced N/A No confident structure predictions are available.
    4 View Details [401..577] PSI-BLAST 20.39794 Crystal Structure of a fragment of DC-SIGNR (containg the carbohydrate recognition domain and two repeats of the neck) complexed with Lewis-x.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  1.13629480035749 bayes_pls_golite062009
  • carbohydrate binding
    		•  0.44675717945952 bayes_pls_golite062009
  • protein binding
    		•  0.059857076934361 bayes_pls_golite062009
    3 No functions predicted.
    4
    Term Confidence Notes
  • binding
    		•  1.13629480035749 bayes_pls_golite062009
  • carbohydrate binding
    		•  0.44675717945952 bayes_pls_golite062009
  • protein binding
    		•  0.059857076934361 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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