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Protein Overview: CE20875

General Information:
Name(s) found: CE20875 [WormBase]
Description(s) found:
Found 21 descriptions.
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  • WBGene00010097 locus:srpa-68 Probable signal recognition particle subunit SRP68 status:Confirmed UniProt:Q20822 protein_id:CAB01573.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 622 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: collagen and cuticulin-based cuticle attachment to epithelium [IMPLink to PubMed article]
    hermaphrodite genitalia development [IMPLink to PubMed article]
    nematode larval development [IMPLink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed article]
    reproduction [IMPLink to PubMed articleLink to PubMed articleLink to PubMed articleLink to PubMed article]
    growth [IMPLink to PubMed article]
    positive regulation of multicellular organism growth [IMPLink to PubMed article]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNDVEMKSE TEELPPFPTV HILQVVKDAQ QQHGLRHGDY ARYRKYCAAK LERMRKALKF  60
   61 TNSHNCQKKR KAKFVKKWLS VESVQNVQFL NFGIFESERR YAEAMIDKIT LEDNPEKSRK 120
  121 KFSMINSLRK AVLHATNLEK IVQESERFDA PTKLEAQAYA AWMRGMCSFE SRNWQKASES 180
  181 LKLAKTVYEK LAEATNNTTL SSIFKGRCRE IQPQLRLCEF NIAESPGAVG TMTELMELRM 240
  241 QMGEGGDSSV DKLISEMRAS ATSAEVVTIE WGGAKSTVDD EKAKQVVQEW KQTEVELAQC 300
  301 QTPKEKMALF EKATADTRDA IDRISDIIRR KSSENADTTV LQSIKAYLEF LKMNGTASRY 360
  361 LAIIDNTKSE KKSKPQDLLR LYDSVIEIYK EVAEIPGADH DKNLIQAFEV KVEYYRAFRC 420
  421 FYMASSYSAL HKYSEAAALF DRTVSRVQDA EGKLKKLKSS SFITNETQSS LNELRSEVES 480
  481 AKVTVRAARL ASAAGDVKTD SELAKIIDKR PLLETVNEWR QWDVRNSLKD KKTIPVASLP 540
  541 PAFIPMPNKP IFFDLANFHL TMPNVDDRLE KLQKDRDATP KKAAKGSSAA AASSKTSNQE 600
  601 EEEQQGLTGM LSGWKKSFWG NK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..79] deduced N/A No confident structure predictions are available.
    2 View Details [80..521] PSI-BLAST 33.154902 The superhelical TPR domain of O-linked GlcNAc transferase reveals structural similarities to importin alpha.
    3 View Details [522..622] MSA 1.474978 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • signal sequence binding
    		•  6.43572978129744 bayes_pls_golite062009
  • binding
    		•  2.52126334054344 bayes_pls_golite062009
  • protein binding
    		•  1.52807685989528 bayes_pls_golite062009
  • oxidoreductase activity, acting on NADH or NADPH, with oxygen as acceptor
    		•  0.534990536504941 bayes_pls_golite062009
  • peroxisome targeting sequence binding
    		•  0.473199490747666 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.420068756437132 bayes_pls_golite062009
  • DNA binding
    		•  0.17110069978022 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.16224979197079 bayes_pls_golite062009
  • RNA binding
    		•  0.139792032742725 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle