| Protein: | CE20875 |
| Organism: | Caenorhabditis elegans |
| Length: | 622 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE20875.
| Description | E-value | Query Range |
Subject Range |
|
|
402.0 | [0..1] | [614..1] |
|
Region A: Residues: [1-79] |
1 11 21 31 41 51
| | | | | |
1 MTNDVEMKSE TEELPPFPTV HILQVVKDAQ QQHGLRHGDY ARYRKYCAAK LERMRKALKF 60
61 TNSHNCQKKR KAKFVKKWL
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [80-521] |
1 11 21 31 41 51
| | | | | |
1 SVESVQNVQF LNFGIFESER RYAEAMIDKI TLEDNPEKSR KKFSMINSLR KAVLHATNLE 60
61 KIVQESERFD APTKLEAQAY AAWMRGMCSF ESRNWQKASE SLKLAKTVYE KLAEATNNTT 120
121 LSSIFKGRCR EIQPQLRLCE FNIAESPGAV GTMTELMELR MQMGEGGDSS VDKLISEMRA 180
181 SATSAEVVTI EWGGAKSTVD DEKAKQVVQE WKQTEVELAQ CQTPKEKMAL FEKATADTRD 240
241 AIDRISDIIR RKSSENADTT VLQSIKAYLE FLKMNGTASR YLAIIDNTKS EKKSKPQDLL 300
301 RLYDSVIEIY KEVAEIPGAD HDKNLIQAFE VKVEYYRAFR CFYMASSYSA LHKYSEAAAL 360
361 FDRTVSRVQD AEGKLKKLKS SSFITNETQS SLNELRSEVE SAKVTVRAAR LASAAGDVKT 420
421 DSELAKIIDK RPLLETVNEW RQ
|
| Detection Method: | |
| Confidence: | 33.154902 |
| Match: | 1w3bA |
| Description: | The superhelical TPR domain of O-linked GlcNAc transferase reveals structural similarities to importin alpha. |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| signal sequence binding | 6.43572978129744 | bayes_pls_golite062009 |
| binding | 2.52126334054344 | bayes_pls_golite062009 |
| protein binding | 1.52807685989528 | bayes_pls_golite062009 |
| oxidoreductase activity, acting on NADH or NADPH, with oxygen as acceptor | 0.534990536504941 | bayes_pls_golite062009 |
| peroxisome targeting sequence binding | 0.473199490747666 | bayes_pls_golite062009 |
| transcription regulator activity | 0.420068756437132 | bayes_pls_golite062009 |
| DNA binding | 0.17110069978022 | bayes_pls_golite062009 |
| nucleic acid binding | 0.16224979197079 | bayes_pls_golite062009 |
| RNA binding | 0.139792032742725 | bayes_pls_golite062009 |
|
Region A: Residues: [522-622] |
1 11 21 31 41 51
| | | | | |
1 WDVRNSLKDK KTIPVASLPP AFIPMPNKPI FFDLANFHLT MPNVDDRLEK LQKDRDATPK 60
61 KAAKGSSAAA ASSKTSNQEE EEQQGLTGML SGWKKSFWGN K
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
