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Protein Overview: CE20478

General Information:
Name(s) found: CE20478 [WormBase]
Description(s) found:
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  • WBGene00015273 status:Predicted UniProt:Q9UAT3 protein_id:CCD62292.1 [WormBase]
  • pir||T33941 hypothetical protein C01B4.9 - Caenorhabditis elegans [NCBI NR]
  • gi|4262573|gb|AAD14701.1| Hypothetical protein C01B4.9 [Caenorhabditis elegans] [NCBI NR]
  • gi|17557434|ref|NP_503681.1| hypothetical protein C01B4.9 [Caenorhabditis elegans] [NCBI NR]
  • [wormpep67.fasta]
  • CE20478 WBGene00015273 status:Predicted TR:Q9UAT3 protein_id:AAD14701.1 [wormpep150.fasta]
  • 20478 WBGene00015273 status:Predicted TR:Q9UAT3 protein_id:AAD14701.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • putative protein family member, with at least 11 transmembrane domains, a coiled coil-4 domain, of ancient origin (61.8 kD) (5C958) [Caenorhabditis elegans]gi|4262573|gb|AAD14701.1| Hypothetical protein C01B4.9 [Caenorhabditis elegans]gi|7495077|pir||T3 [nrdb_11152004_Chlamydomonas]
  • status:Predicted TR:Q9UAT3 protein_id:AAD14701.1 [wormpep115.fasta.reversed]
  • CE20478 status:Predicted TR:Q9UAT3 protein_id:AAD14701.1 [wormpep80.hongbin]
  • CE20478 WBGene00015273 status:Predicted UniProt:Q9UAT3_CAEEL protein_id:AAD14701.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE20478 WBGene00015273 status:Predicted UniProt:Q9UAT3_CAEEL protein_id:AAD14701.1| [wormORF-contam.fasta]
  • Hypothetical protein C01B4.9 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • C01B4.9 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE20478 WBGene00015273 status:Predicted UniProt:Q9UAT3 protein_id:AAD14701.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE20478 WBGene00015273 status:Predicted UniProt:Q9UAT3 protein_id:CCD62292.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
    • Organism: Caenorhabditis elegans
    Length: 571 amino acids

    Gene Ontology:
    Cellular Component: integral to membrane [IEALink to PubMed article]
    Biological Process: inorganic anion transport [IEALink to PubMed article]
    transport [IEALink to PubMed article]
    organic anion transport [IEALink to PubMed article]
    Molecular Function: inorganic anion transmembrane transporter activity [IEALink to PubMed article]
    secondary active monocarboxylate transmembrane transporter activity [IEALink to PubMed article]
    transporter activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKQPIDGPL DAEKKEVTVA VTAAENFEEQ VEEVGKVTPP DGGYGWVVVA ASFLVNMAVD  60
   61 GVIYTCGKIL VPIWADQFGS TSVAGAVISI LTGCYYLAGP LASSFVNVFG IRSVAIAGSI 120
  121 LATTAFLLSR FASTIWELYL LFGVLGGIGF GCMYLPSIVI LSTYFAKKRS VATGIAVCGS 180
  181 GIGTMVFSTI NGPVFDYFGK DVGSFMVYLA AIAISGSLFS LLFAPLKATE HQVKKVAKMV 240
  241 RNYEGKPEEP TQRLLEDVRN DLEELNRPGH NADTFYAGNA PVSRSRSNTC SFLGIFLFKK 300
  301 IQNCLKFRET IKNRKKLDRK AAESAEAHVV HATEHHTVHH VVKKSKFTKF KESLCSVLDK 360
  361 DLLFSPSFMT LAVSGTFTVL SFLVPFVYLA LAMKQKNPDF TDAELSLPVT LIGAFNIMFR 420
  421 IGCGMVADHP KMSALQVSNV ATIIAGTSML FVPFCTELWH YVVFCIPFSA GVACFAALRS 480
  481 VICVELIGVE KLSNAFGILM VFMGIGAVVG GPIAAQIKDI TGNYDISFYV MGIIFAFSGV 540
  541 MTIRLPELKA WEESKKLARA GTEMRVISEA S

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..454] PSI-BLAST 20.69897 Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli
    2 View Details [455..571] FFAS03 2.51 Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transporter activity
    		•  4.09176719149278 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  3.59744164024479 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  3.5865018981083 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  3.54194478414824 bayes_pls_golite062009
  • ion transmembrane transporter activity
    		•  2.21266150105753 bayes_pls_golite062009
  • organic acid transmembrane transporter activity
    		•  2.15783210522667 bayes_pls_golite062009
  • cation transmembrane transporter activity
    		•  1.79369588808394 bayes_pls_golite062009
  • active transmembrane transporter activity
    		•  1.59419818573076 bayes_pls_golite062009
  • secondary active transmembrane transporter activity
    		•  1.22264637452409 bayes_pls_golite062009
  • polyol transmembrane transporter activity
    		•  0.924836669821548 bayes_pls_golite062009
  • alcohol transmembrane transporter activity
    		•  0.924836669821548 bayes_pls_golite062009
  • binding
    		•  0.818732184064642 bayes_pls_golite062009
  • glycerol transmembrane transporter activity
    		•  0.812001619402678 bayes_pls_golite062009
  • symporter activity
    		•  0.74591237387473 bayes_pls_golite062009
  • solute:cation symporter activity
    		•  0.74591237387473 bayes_pls_golite062009
  • cation:sugar symporter activity
    		•  0.143419068761182 bayes_pls_golite062009
  • sugar:hydrogen symporter activity
    		•  0.143419068761182 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle