YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE20478
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	43	0.93
Transmembrane Helix	44	64	0.88
Non-Cytoplasmic	65	77	0.77
Transmembrane Helix	78	99	0.89
Cytoplasmic	100	107	0.84
Transmembrane Helix	108	129	0.90
Non-Cytoplasmic	130	138	0.74
Transmembrane Helix	139	161	0.91
Cytoplasmic	162	170	0.80
Transmembrane Helix	171	190	0.94
Non-Cytoplasmic	191	204	0.78
Transmembrane Helix	205	226	0.92
Cytoplasmic	227	367	0.99
Transmembrane Helix	368	392	0.86
Non-Cytoplasmic	393	404	0.87
Transmembrane Helix	405	424	0.91
Cytoplasmic	425	433	0.83
Transmembrane Helix	434	454	0.91
Non-Cytoplasmic	455	459	0.74
Transmembrane Helix	460	483	0.88
Cytoplasmic	484	494	0.83
Transmembrane Helix	495	515	0.95
Non-Cytoplasmic	516	525	0.83
Transmembrane Helix	526	546	0.93
Cytoplasmic	547	571	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKQPIDGPL DAEKKEVTVA VTAAENFEEQ VEEVGKVTPP DGGYGWVVVA ASFLVNMAVD  60
   61 GVIYTCGKIL VPIWADQFGS TSVAGAVISI LTGCYYLAGP LASSFVNVFG IRSVAIAGSI 120
  121 LATTAFLLSR FASTIWELYL LFGVLGGIGF GCMYLPSIVI LSTYFAKKRS VATGIAVCGS 180
  181 GIGTMVFSTI NGPVFDYFGK DVGSFMVYLA AIAISGSLFS LLFAPLKATE HQVKKVAKMV 240
  241 RNYEGKPEEP TQRLLEDVRN DLEELNRPGH NADTFYAGNA PVSRSRSNTC SFLGIFLFKK 300
  301 IQNCLKFRET IKNRKKLDRK AAESAEAHVV HATEHHTVHH VVKKSKFTKF KESLCSVLDK 360
  361 DLLFSPSFMT LAVSGTFTVL SFLVPFVYLA LAMKQKNPDF TDAELSLPVT LIGAFNIMFR 420
  421 IGCGMVADHP KMSALQVSNV ATIIAGTSML FVPFCTELWH YVVFCIPFSA GVACFAALRS 480
  481 VICVELIGVE KLSNAFGILM VFMGIGAVVG GPIAAQIKDI TGNYDISFYV MGIIFAFSGV 540
  541 MTIRLPELKA WEESKKLARA GTEMRVISEA S