YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: pus-1

General Information:
Name(s) found: pus-1 / CE20158 [WormBase]
Description(s) found:
Found 18 descriptions.
SHOW ALL
  • WBGene00004248 locus:pus-1 tRNA pseudouridine synthase status:Confirmed UniProt:Q9XXN0 protein_id:CAA16518.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 415 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: tRNA processing [IEALink to PubMed article]
    Molecular Function: pseudouridylate synthase activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKTVEEQTV DKLNHVQSGG VHKEPKKPRV KQAKYAMLLG YQGKKYYGMQ LQKDLPTIES  60
   61 KLLEAMETAG WITTAQKEKP FDFFFQRAAR TDRAVSAARQ MCGMQLPRDD AKYQAEGAGI 120
  121 LNNILPADIR VFGMRRTTNF FHPQKQCDHR TYSYTCPSFV FAKPTELTNS SFRLSPETLA 180
  181 EVNSILSIYL GTHNFFNYTA KRAYDDMSSN RYIISFECKE PFLFRDDFRK EDVEFVQIVI 240
  241 KGQSFVLHQI RKMVGMVITV IRELHLKSSI QRSFEGQRMD IPMAPGLGLL LERTHYDSYD 300
  301 RKNSKSHEPL TDWGEIIEKE IERTKFELIT KDMIETELLT QGMLKWLADL VHHDFTANAE 360
  361 AEEPEKKTFV TMAAACASKA AKEQDGVAPE AQDAPKEAEA PAEVTPEPVA ATSSG

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..309] PSI-BLAST 81.045757 No description for 2nqpA was found.
    2 View Details [310..415] MSA 1.101986 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • pseudouridine synthase activity
    		•  5.19957135839682 bayes_pls_golite062009
  • intramolecular transferase activity
    		•  3.78688422405974 bayes_pls_golite062009
  • isomerase activity
    		•  2.91720316078381 bayes_pls_golite062009
  • transcription regulator activity
    		•  2.31595692797262 bayes_pls_golite062009
  • catalytic activity
    		•  2.02180970970004 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.01176877679953 bayes_pls_golite062009
  • DNA binding
    		•  1.95629441517514 bayes_pls_golite062009
  • binding
    		•  1.32358464424761 bayes_pls_golite062009
  • transcription activator activity
    		•  1.27357280497723 bayes_pls_golite062009
  • protein binding
    		•  1.10318302423731 bayes_pls_golite062009
  • RNA binding
    		•  0.706879359688019 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle