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Protein Overview: smd-1

General Information:
Name(s) found: smd-1 / CE18705 [WormBase]
Description(s) found:
Found 24 descriptions.
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  • WBGene00004875 locus:smd-1 S-adenosylmethionine decarboxylase proenzyme status:Confirmed UniProt:O02655 protein_id:CAB16315.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 368 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: spermidine biosynthetic process [IEALink to PubMed article]
    spermine biosynthetic process [IEALink to PubMed article]
    Molecular Function: adenosylmethionine decarboxylase activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSATSATNFA VQTHPVKAPD EEYFFEGAEK LLELWFCSST QNETRSLRII PREEIDAMLD  60
   61 IARCKILHSK HNESIDSYVL SESSLFISDN RVILKTCGTT RLLAALPVIM QLAGAYAGLD 120
  121 QVQSVYYSRK NFLRPDLQPS LHKNFDAEVE YLDSFFVDGH AYCLGSLKQD RWYLYTFHRE 180
  181 VEFPAHKQPD HTLEILMSDL DEEVLHKFTK DYAVDGNDCF MRAGIDKIIP AGADVHDELF 240
  241 DPCGYSMNAY MNDTDQYATI HVTPEKAFSF ASFETNQDLV CLYSQTRKVL QCFRPNKILM 300
  301 TVFANDISEK GKDAQQQLWD RELPGYRRTN VQFVRLETET LVYAHFVRKA STGQDSSSSD 360
  361 EDDGERSD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..368] PSI-BLAST 124.0 S-adenosylmethionine decarboxylase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • adenosylmethionine decarboxylase activity
    		•  6.97190143843809 bayes_pls_golite062009
  • carbon-carbon lyase activity
    		•  2.68228786608236 bayes_pls_golite062009
  • carboxy-lyase activity
    		•  1.55250570844159 bayes_pls_golite062009
  • binding
    		•  1.4725833406744 bayes_pls_golite062009
  • catalytic activity
    		•  1.25843830926101 bayes_pls_golite062009
  • lyase activity
    		•  0.834955527171148 bayes_pls_golite062009
  • protein binding
    		•  0.443666756110255 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.81

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle