| Protein: | smd-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 368 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for smd-1.
| Description | E-value | Query Range |
Subject Range |
|
|
464.0 | [0..16] | [368..1] |
|
Region A: Residues: [1-368] |
1 11 21 31 41 51
| | | | | |
1 MSATSATNFA VQTHPVKAPD EEYFFEGAEK LLELWFCSST QNETRSLRII PREEIDAMLD 60
61 IARCKILHSK HNESIDSYVL SESSLFISDN RVILKTCGTT RLLAALPVIM QLAGAYAGLD 120
121 QVQSVYYSRK NFLRPDLQPS LHKNFDAEVE YLDSFFVDGH AYCLGSLKQD RWYLYTFHRE 180
181 VEFPAHKQPD HTLEILMSDL DEEVLHKFTK DYAVDGNDCF MRAGIDKIIP AGADVHDELF 240
241 DPCGYSMNAY MNDTDQYATI HVTPEKAFSF ASFETNQDLV CLYSQTRKVL QCFRPNKILM 300
301 TVFANDISEK GKDAQQQLWD RELPGYRRTN VQFVRLETET LVYAHFVRKA STGQDSSSSD 360
361 EDDGERSD
|
| Detection Method: |  |
| Confidence: | 124.0 |
| Match: | 1msvA |
| Description: | S-adenosylmethionine decarboxylase |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| adenosylmethionine decarboxylase activity | 6.97190143843809 | bayes_pls_golite062009 |
| carbon-carbon lyase activity | 2.68228786608236 | bayes_pls_golite062009 |
| carboxy-lyase activity | 1.55250570844159 | bayes_pls_golite062009 |
| binding | 1.4725833406744 | bayes_pls_golite062009 |
| catalytic activity | 1.25843830926101 | bayes_pls_golite062009 |
| lyase activity | 0.834955527171148 | bayes_pls_golite062009 |
| protein binding | 0.443666756110255 | bayes_pls_golite062009 |
