Protein Overview: snb-1

General Information:
Name(s) found:	snb-1 / CE18252 [WormBase]
Description(s) found: SHOW ONLY BEST	WBGene00004897 locus:snb-1 Synaptobrevin-1 status:Confirmed UniProt:O02495 protein_id:CCD71211.1 [WormBase] pir\|\|T33239 synaptobrevin SNB-1 - Caenorhabditis elegans [NCBI NR] gi\|74956515\|sp\|O02495.1\|SYB1_CAEEL RecName: Full=Synaptobrevin-1; AltName: Full=Synaptobrevin-related protein 1 [NCBI NR] gi\|3193208\|gb\|AAC19234.1\| Synaptobrevin related protein 1 [Caenorhabditis elegans] [NCBI NR] gi\|2196768\|gb\|AAB61235.1\| SNB-1; synaptobrevin [Caenorhabditis elegans] [NCBI NR] gi\|2196766\|gb\|AAB61234.1\| SNB-1; synaptobrevin [Caenorhabditis elegans] [NCBI NR] gi\|17563282\|ref\|NP_504688.1\| SyNaptoBrevin related family member (snb-1) [Caenorhabditis elegans] [NCBI NR] Synaptobrevin-1 OS=Caenorhabditis elegans GN=snb-1 PE=1 SV=1 [Swiss-Prot] [wormpep67.fasta] CE18252 WBGene00004897 locus:snb-1 synaptobrevin status:Confirmed TR:O02495 protein_id:AAC19234.1 [wormpep150.fasta] 18252 WBGene00004897 locus:snb-1 synaptobrevin status:Confirmed TR:O02495 protein_id:AAC19234.1 [wormpep130-phg-ecoli-orf-rand.fasta] SyNaptoBrevin related, synaptic vesicle-associated membrane protein (12.0 kD) (snb-1) [Caenorhabditis elegans]gi\|3193208\|gb\|AAC19234.1\| Synaptobrevin related protein 1 [Caenorhabditis elegans]gi\|2196768\|gb\|AAB61235.1\| SNB-1; synaptobrevin [Caenorhabditi [nrdb_11152004_Chlamydomonas] locus:snb-1 synaptobrevin status:Confirmed TR:O02495 protein_id:AAC19234.1 [wormpep115.fasta.reversed] CE18252 locus:snb-1 synaptobrevin status:Confirmed [wormpep80.hongbin] CE18252 WBGene00004897 locus:snb-1 synaptobrevin status:Confirmed UniProt:SYB1_CAEEL protein_id:AAC19234.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta] CE18252 WBGene00004897 locus:snb-1 synaptobrevin status:Confirmed UniProt:SYB1_CAEEL protein_id:AAC19234.1\| [wormORF-contam.fasta] Synaptobrevin related protein 1 [Caenorhabditis elegans] [nr-271106-contam.fasta] SNB-1; synaptobrevin [Caenorhabditis elegans] [nr-271106-contam.fasta] T10H9.4 [Caenorhabditis elegans] [nr-271106-contam.fasta] CE18252 WBGene00004897 locus:snb-1 synaptobrevin status:Confirmed UniProt:O02495 protein_id:AAC19234.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta] [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr] CE18252 WBGene00004897 locus:snb-1 synaptobrevin status:Confirmed UniProt:O02495 protein_id:CCD71211.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta] CE18252 WBGene00004897 locus:snb-1 status:Confirmed UniProt:O02495 protein_id:CCD71211.1 Synaptobrevin-1 [wormpep246-ecoli-contam.fasta]
Organism:	Caenorhabditis elegans
Length:	109 amino acids
Gene Ontology:
Cellular Component:	synaptic vesicle [IDA ] integral to membrane [IEA]
Biological Process:	synaptic transmission, cholinergic [IDA] regulation of pharyngeal pumping [IDA] vesicle-mediated transport [IEA] locomotory behavior [IMP] nematode larval development [IMP] morphogenesis of an epithelium [IMP] regulation of hindgut contraction [IMP] synaptic vesicle exocytosis [IDA] defecation [IMP]
Molecular Function:	SNAP receptor activity [IDA]

Sequence:
Sequence: [PDR BLAST] [ProtParam]	1 11 21 31 41 51 \| \| \| \| \| \| 1 MDAQGDAGAQ GGSQGGPRPS NKRLQQTQAQ VDEVVGIMKV NVEKVLERDQ KLSQLDDRAD 60 61 ALQEGASQFE KSAATLKRKY WWKNIKMMII MCAIVVILII IIVLWAGGK

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

SHOWING SINGLE HITS. [ Hide Single Hits ]

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No yeast two-hybrid interactions found for this protein.

Microscopy / Localization Data

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No microscopy data found in the PDR for this protein.

Protein Structure Data

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Domains predicted:

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..109]	PSI-BLAST	20.69897	Synaptobrevin

Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

Philius Transmembrane Prediction:

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Source: Reynolds et al. 2008. Manuscript submitted

Philius confidence legend

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Created and Maintained by: Michael Riffle