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Protein Overview: sra-39

General Information:
Name(s) found: sra-39 / CE16438 [WormBase]
Description(s) found:
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  • WBGene00005065 locus:sra-39 Serpentine receptor class alpha-39 status:Partially_confirmed UniProt:O62420 protein_id:CAB01772.1 [WormBase]
  • pir||T25089 hypothetical protein T21H8.4 - Caenorhabditis elegans [NCBI NR]
  • gi|74960404|sp|O62420.2|SRA39_CAEEL RecName: Full=Serpentine receptor class alpha-39; Short=Protein sra-39 [NCBI NR]
  • gi|3880747|emb|CAA19474.1| C. elegans protein T21H8.4, partially confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • gi|3880043|emb|CAB01772.1| C. elegans protein T21H8.4, partially confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • gi|17569927|ref|NP_510315.1| Serpentine Receptor, class A (alpha) family member (sra-39) [Caenorhabditis elegans] [NCBI NR]
  • Serpentine receptor class alpha-39 OS=Caenorhabditis elegans GN=sra-39 PE=3 SV=2 [Swiss-Prot]
  • [wormpep67.fasta]
  • CE16438 WBGene00005065 locus:sra-39 7TM receptor like status:Partially_confirmed TR:O62420 protein_id:CAA19474.1 [wormpep150.fasta]
  • 16438 WBGene00005065 locus:sra-39 7TM receptor like status:Partially_confirmed TR:O62420 protein_id:CAA19474.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • putative protein family member, with at least 5 transmembrane domains (XO516) [Caenorhabditis elegans]gi|3880043|emb|CAB01772.1| Hypothetical protein T21H8.4 [Caenorhabditis elegans]gi|3880747|emb|CAA19474.1| Hypothetical protein T21H8.4 [Caenorhabditis [nrdb_11152004_Chlamydomonas]
  • locus:sra-39 7TM receptor like status:Partially_confirmed TR:O62420 protein_id:CAA19474.1 [wormpep115.fasta.reversed]
  • CE16438 7TM receptor like status:Predicted TR:O62420 protein_id:CAA19474.1 [wormpep80.hongbin]
  • CE16438 WBGene00005065 locus:sra-39 7TM receptor like status:Partially_confirmed UniProt:SRA39_CAEEL protein_id:CAB01772.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE16438 WBGene00005065 locus:sra-39 7TM receptor like status:Partially_confirmed UniProt:SRA39_CAEEL protein_id:CAB01772.1| [wormORF-contam.fasta]
  • CE16438 WBGene00005065 locus:sra-39 7TM receptor like status:Partially_confirmed SW:O62420 protein_id:CAA19474.1 [wormpep160-contam.fasta]
  • Hypothetical protein T21H8.4 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Serpentine Receptor, class A (alpha) family member (sra-39) [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Serpentine receptor class alpha-39 (Protein sra-39) [nr-271106-contam.fasta]
  • CE16438 WBGene00005065 locus:sra-39 7TM receptor like status:Partially_confirmed UniProt:O62420 protein_id:CAB01772.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE16438 WBGene00005065 locus:sra-39 status:Partially_confirmed UniProt:O62420 protein_id:CAB01772.1 Serpentine receptor class alpha-39 [wormpep246-ecoli-contam.fasta]
    • Organism: Caenorhabditis elegans
    Length: 375 amino acids

    Gene Ontology:
    Cellular Component: membrane [IEALink to PubMed article]
    integral to membrane [IEALink to PubMed article]
    Biological Process: sensory perception of chemical stimulus [IEALink to PubMed article]
    Molecular Function: transmembrane receptor activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGCETRGQL YYHPAYLFAI IFQGTSGYLT FPILFIILKK YAFKVYYHPN LVFLMMLNVV  60
   61 SCLLLGGLTA WSATNFFLNL MIKPSPCDLL LKTYFCSKIR GTFLFAFCLV TTSHAGILLE 120
  121 RSWATYSVKN YERQGRALGT ILAIVAVAVA ATAIFILLLP EDGEEMITTC LTFSASKSIG 180
  181 SRVYVMFFVQ LLLDAVISIV HLVLYRYNKN IDKHGSTSLS EQFQRNENVK TLKQVTPLLI 240
  241 LSNVTIGVYI FIVSVFRLYK DYLPPNWYEI IAANLFIMPH MPFMFTSLIL VELWLGKKRQ 300
  301 DRIHKDMMAS QDVPLDDQFH IAMENWDVHF QSRLKAQARA NRKPLSANWT SSTLITKFKK 360
  361 RQTTVAVISI PPSPS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..375] PSI-BLAST 46.045757 Rhodopsin


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle