YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	sra-39
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGCETRGQL YYHPAYLFAI IFQGTSGYLT FPILFIILKK YAFKVYYHPN LVFLMMLNVV  60
   61 SCLLLGGLTA WSATNFFLNL MIKPSPCDLL LKTYFCSKIR GTFLFAFCLV TTSHAGILLE 120
  121 RSWATYSVKN YERQGRALGT ILAIVAVAVA ATAIFILLLP EDGEEMITTC LTFSASKSIG 180
  181 SRVYVMFFVQ LLLDAVISIV HLVLYRYNKN IDKHGSTSLS EQFQRNENVK TLKQVTPLLI 240
  241 LSNVTIGVYI FIVSVFRLYK DYLPPNWYEI IAANLFIMPH MPFMFTSLIL VELWLGKKRQ 300
  301 DRIHKDMMAS QDVPLDDQFH IAMENWDVHF QSRLKAQARA NRKPLSANWT SSTLITKFKK 360
  361 RQTTVAVISI PPSPS

Type	Start	End	Confidence
Non-Cytoplasmic	1	15	0.94
Transmembrane Helix	16	38	0.91
Cytoplasmic	39	50	0.82
Transmembrane Helix	51	71	0.95
Non-Cytoplasmic	72	98	0.91
Transmembrane Helix	99	119	0.90
Cytoplasmic	120	136	0.90
Transmembrane Helix	137	159	0.93
Non-Cytoplasmic	160	182	0.96
Transmembrane Helix	183	205	0.91
Cytoplasmic	206	234	0.97
Transmembrane Helix	235	258	0.86
Non-Cytoplasmic	259	275	0.81
Transmembrane Helix	276	295	0.94
Cytoplasmic	296	375	0.99