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Protein Overview: srab-12

General Information:
Name(s) found: srab-12 / CE15719 [WormBase]
Description(s) found:
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  • WBGene00008128 locus:srab-12 status:Partially_confirmed UniProt:O45308 protein_id:CAB03971.1 [WormBase]
  • pir||T19980 hypothetical protein C47A10.6 - Caenorhabditis elegans [NCBI NR]
  • gi|3875002|emb|CAB03971.1| C. elegans protein C47A10.6, partially confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • gi|17558674|ref|NP_507492.1| Serpentine Receptor, class AB (class A-like) family member (srab-12) [Caenorhabditis elegans] [NCBI NR]
  • [wormpep67.fasta]
  • CE15719 WBGene00008128 locus:srab-12 status:Partially_confirmed TR:O45308 protein_id:CAB03971.1 [wormpep150.fasta]
  • 15719 WBGene00008128 status:Partially_confirmed TR:O45308 protein_id:CAB03971.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • nematode chemoreceptor, Sra family (5S256) [Caenorhabditis elegans]gi|3875002|emb|CAB03971.1| Hypothetical protein C47A10.6 [Caenorhabditis elegans]gi|7497535|pir||T19980 hypothetical protein C47A10.6 - Caenorhabditis elegans [nrdb_11152004_Chlamydomonas]
  • CE15719 WBGene00008128 status:Partially_confirmed TR:O45308 protein_id:CAB03971.1 [wormpep132.fasta]
  • 15719 WBGene00008128 locus:srab-12 status:Partially_confirmed TR:O45308 protein_id:CAB03971.1 [wormpep150-phg-orf-ecoli-rand.fasta]
  • status:Partially_confirmed TR:O45308 protein_id:CAB03971.1 [wormpep115.fasta.reversed]
  • CE15719 status:Predicted TR:O45308 protein_id:CAB03971.1 [wormpep80.hongbin]
  • CE15719 WBGene00008128 locus:srab-12 status:Partially_confirmed UniProt:O45308_CAEEL protein_id:CAB03971.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE15719 WBGene00008128 locus:srab-12 status:Partially_confirmed UniProt:O45308_CAEEL protein_id:CAB03971.1| [wormORF-contam.fasta]
  • Hypothetical protein C47A10.6 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Serpentine Receptor, class AB (class A-like) family member (srab-12) [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE15719 WBGene00008128 locus:srab-12 status:Partially_confirmed UniProt:O45308 protein_id:CAB03971.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE15719 WBGene00008128 locus:srab-12 status:Partially_confirmed UniProt:O45308 protein_id:CAB03971.1 7TM GPCR, serpentine receptor class ab (A-like)(Srab) [wormpep246-ecoli-contam.fasta]
  • Serpentine Receptor, class AB (Class A-like) OS=Caenorhabditis elegans GN=srab-12 PE=4 SV=1 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 346 amino acids

    Gene Ontology:
    Cellular Component: integral to membrane [IEALink to PubMed article]
    Biological Process: sensory perception of chemical stimulus [IEALink to PubMed article]
    Molecular Function: transmembrane receptor activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTGSQDPLVF NCSEMLQVAN SRFLRSVLYF NLFCSAVAVF YLIHTWLSIC RYKLMHFNLK  60
   61 FLMKIHCAAL LIHCVPRFFL HLFDLYYYFF GVDCYDMQPS SLRCFILRFP YMFGLILSST 120
  121 TTIFLMIERG FATYYSQHYE HGYKSIGVII AIFQLLCSLI LMASVFHEYD FDAPHYYCSS 180
  181 ISVKFPLWVI IPEVLIIVFQ IAARIVNRCL LALNKRIRAR SVTATLSNRY QLEANMRNIR 240
  241 LLQSFTLCDL IFVFTCFTLS APVHYYSSEM ERPTYHALVE VVNFVPLYSV VMPLYLWVFQ 300
  301 KKHRDTVSNT LQASLTTSSD HYFNVLNQQL SVKEGEKRQQ RKLRNR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..346] PSI-BLAST 39.69897 Rhodopsin


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle