YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	srab-12
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTGSQDPLVF NCSEMLQVAN SRFLRSVLYF NLFCSAVAVF YLIHTWLSIC RYKLMHFNLK  60
   61 FLMKIHCAAL LIHCVPRFFL HLFDLYYYFF GVDCYDMQPS SLRCFILRFP YMFGLILSST 120
  121 TTIFLMIERG FATYYSQHYE HGYKSIGVII AIFQLLCSLI LMASVFHEYD FDAPHYYCSS 180
  181 ISVKFPLWVI IPEVLIIVFQ IAARIVNRCL LALNKRIRAR SVTATLSNRY QLEANMRNIR 240
  241 LLQSFTLCDL IFVFTCFTLS APVHYYSSEM ERPTYHALVE VVNFVPLYSV VMPLYLWVFQ 300
  301 KKHRDTVSNT LQASLTTSSD HYFNVLNQQL SVKEGEKRQQ RKLRNR

Type	Start	End	Confidence
Non-Cytoplasmic	1	26	0.92
Transmembrane Helix	27	48	0.90
Cytoplasmic	49	61	0.86
Transmembrane Helix	62	81	0.89
Non-Cytoplasmic	82	106	0.88
Transmembrane Helix	107	127	0.91
Cytoplasmic	128	145	0.85
Transmembrane Helix	146	166	0.95
Non-Cytoplasmic	167	186	0.89
Transmembrane Helix	187	207	0.90
Cytoplasmic	208	244	0.91
Transmembrane Helix	245	265	0.92
Non-Cytoplasmic	266	275	0.86
Transmembrane Helix	276	299	0.86
Cytoplasmic	300	346	0.96