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Protein Overview: CE14894

General Information:
Name(s) found: CE14894 [WormBase]
Description(s) found:
Found 18 descriptions.
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  • WBGene00013143 status:Partially_confirmed UniProt:O18215 protein_id:CAB16490.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 793 amino acids

    Gene Ontology:
    Cellular Component: small-subunit processome [IEALink to PubMed article]
    Biological Process: positive regulation of growth rate [IMPLink to PubMed articleLink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed article]
    gamete generation [IMPLink to PubMed article]
    rRNA processing [IEALink to PubMed article]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEPIKEIAA KRSVEAVYTG GTVRWSANGQ KLFSTCTNVV KVIDLADNTA SYTIGDPEDE  60
   61 LRITCTAVDK NRNRLLVAYN NQIIREYSIP LDPSTTKPEL ARTWKTIHTA PILVMEFNEE 120
  121 GHLLATGSAD HIVKVWNLTE QQCTHTLKGP SVVSAILFGK HEKLVVGYIE GQLNLYNIMR 180
  181 GAPKKLVNTW KSHNSHITAL LQVPDSRVVV ALSRDQTMSI HETETQETLR VLPLYESIEG 240
  241 GAIGHNGNLF TVGEEGVVKE FVIETAKLVR KKRIASSNLD HLAYDVVSNR FLAISAEQNL 300
  301 IILDFENLKI ARQIVGFHDE IYSCCLLGKD ESHMAVASNT SEIRLYNTKT LDCQLIRGHT 360
  361 ESVLSVVSPT WDTSLLASCS KDNSIIFWRL VTSPENDSCS TLVPVAAATG HANTVTALAI 420
  421 SNTGRAPFLA SVSTDCTIKL WGLGVSTKLK EVKIDAEKDF VEQLPKLTCS STMVAHGKDV 480
  481 NCVDISESDA LIATGGMDKL VKLWQVDTHK MQLGIAGTLS GHRRGVGDVK FAKNSHKLAS 540
  541 CSGDMTIKIW NISEKSCLQT ISGHSCAVFR VIFARNDSQL ISADSAGIIK IWTIKTADCE 600
  601 CSIDAHTDKI WSLSKNHNES EFVTAGTDGR IVVWKDVTEE KQKAEDNKRR EAIEQDQTLT 660
  661 NLLSQKRYSE ALVFALTLAK PFCAFKVINA LMAEETPEEL GSAIRRLDTR QIEILLQFTV 720
  721 KWNTNSRTSS VAQRVLYEIV HIVDPEELVS MPGAYGYIES FLPYTQRHMD RLDRAKQDVS 780
  781 LFDFVWRQMR SSV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..97] PSI-BLAST 57.0 Tup1, C-terminal domain
    2 View Details [98..636] PSI-BLAST 61.221849 Actin interacting protein 1
    3 View Details [637..793] PSI-BLAST 74.39794 No description for 2gnqA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • snoRNA binding
    		•  6.03079504484743 bayes_pls_golite062009
  • structural molecule activity
    		•  5.05435272846365 bayes_pls_golite062009
  • histone methyltransferase activity (H3-K4 specific)
    		•  4.71992275913384 bayes_pls_golite062009
    		• 3.41022148055944 bayes_pls_golite062009
  • S-adenosylmethionine-dependent methyltransferase activity
    		•  3.25521258308263 bayes_pls_golite062009
  • RNA binding
    		•  3.0829625416797 bayes_pls_golite062009
  • binding
    		•  2.42570478946173 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  2.20122168933317 bayes_pls_golite062009
  • transcription repressor activity
    		•  2.03485691549401 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.95667720244696 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.90457914882449 bayes_pls_golite062009
  • histone methyltransferase activity
    		•  1.85632145559025 bayes_pls_golite062009
  • actin binding
    		•  1.40054662654509 bayes_pls_golite062009
  • DNA binding
    		•  1.38475369554616 bayes_pls_golite062009
  • protein methyltransferase activity
    		•  1.35170368882651 bayes_pls_golite062009
  • protein binding
    		•  1.21879977456466 bayes_pls_golite062009
  • transcription corepressor activity
    		•  1.2107661925348 bayes_pls_golite062009
  • lysine N-methyltransferase activity
    		•  1.15313682561559 bayes_pls_golite062009
  • protein-lysine N-methyltransferase activity
    		•  1.15313682561559 bayes_pls_golite062009
  • histone-lysine N-methyltransferase activity
    		•  1.15313682561559 bayes_pls_golite062009
  • tubulin binding
    		•  1.10875870970504 bayes_pls_golite062009
  • microtubule binding
    		•  1.03769395387791 bayes_pls_golite062009
  • dynein binding
    		•  0.99104010024574 bayes_pls_golite062009
  • transcription factor activity
    		•  0.804334981068351 bayes_pls_golite062009
  • histone binding
    		•  0.685319917508843 bayes_pls_golite062009
  • receptor binding
    		•  0.498471793965061 bayes_pls_golite062009
  • phosphotransferase activity, alcohol group as acceptor
    		•  0.426429095658617 bayes_pls_golite062009
  • transcription factor binding
    		•  0.412844855996155 bayes_pls_golite062009
  • kinase activity
    		•  0.387572734234845 bayes_pls_golite062009
  • protein kinase activity
    		•  0.229242350006544 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  0.226335610368636 bayes_pls_golite062009
  • ligase activity
    		•  0.20682813699621 bayes_pls_golite062009
  • transcription cofactor activity
    		•  0.19391619547146 bayes_pls_golite062009
  • chromatin binding
    		•  0.190739938818992 bayes_pls_golite062009
  • mRNA binding
    		•  0.0519838181830878 bayes_pls_golite062009
  • N-methyltransferase activity
    		•  0.00335766408304172 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle