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Protein Overview: ret-1

General Information:
Name(s) found: ret-1 / CE14668 [WormBase]
Description(s) found:
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  • WBGene00004336 locus:ret-1 Reticulon-like protein status:Confirmed UniProt:Q23188 protein_id:CAB01523.1 [WormBase]
  • pir||T26213 hypothetical protein W06A7.3b - Caenorhabditis elegans [NCBI NR]
  • gi|3880495|emb|CAB01523.1| C. elegans protein W06A7.3b, confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • gi|17565082|ref|NP_506658.1| RETiculon protein family member (ret-1) [Caenorhabditis elegans] [NCBI NR]
  • [wormpep67.fasta]
  • CE14668 WBGene00004336 locus:ret-1 histone H4 protein like status:Confirmed TR:Q23188 protein_id:CAB01523.1 [wormpep150.fasta]
  • 14668 WBGene00004336 locus:ret-1 histone H4 protein like status:Confirmed TR:Q23188 protein_id:CAB01523.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • RETiculon protein (ret-1) [Caenorhabditis elegans]gi|3880495|emb|CAB01523.1| Hypothetical protein W06A7.3b [Caenorhabditis elegans]gi|7509047|pir||T26213 hypothetical protein W06A7.3b - Caenorhabditis elegans [nrdb_11152004_Chlamydomonas]
  • locus:ret-1 histone H4 protein like status:Confirmed TR:Q23188 protein_id:CAB01523.1 [wormpep115.fasta.reversed]
  • CE14668 histone H4 protein like status:Confirmed TR:Q23188 protein_id:CAB01523.1 [wormpep80.hongbin]
  • CE14668 WBGene00004336 locus:ret-1 histone H4 protein like status:Confirmed UniProt:Q23188_CAEEL protein_id:CAB01523.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE14668 WBGene00004336 locus:ret-1 histone H4 protein like status:Confirmed UniProt:Q23188_CAEEL protein_id:CAB01523.1| [wormORF-contam.fasta]
  • Hypothetical protein W06A7.3b [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • RETiculon protein family member (ret-1) [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE14668 WBGene00004336 locus:ret-1 histone H4 protein like status:Confirmed UniProt:Q23188 protein_id:CAB01523.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE14668 WBGene00004336 locus:ret-1 status:Confirmed UniProt:Q23188 protein_id:CAB01523.1 Reticulon-like protein [wormpep246-ecoli-contam.fasta]
  • Isoform of G5EDI2, Reticulon-like protein OS=Caenorhabditis elegans GN=ret-1 PE=1 SV=1 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 222 amino acids

    Gene Ontology:
    Cellular Component: endoplasmic reticulum [IEALink to PubMed article]
    proteinaceous extracellular matrix [IEALink to PubMed article]
    Biological Process: cell adhesion [IEALink to PubMed article]
    blood coagulation [IEALink to PubMed article]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQTRFVNKK YSKQPTWVPA TDFPGKILDV IYWRDAKKSA IVLSLALLVL FVLAKYPLLT  60
   61 VVTYSLLLAL GAAAGFRVFK KVEAQIKKTD SEHPFSEILA QDLTLPQEKV HAQADVFVEH 120
  121 ATCIANKLKK LVFVESPLES IKFGLVLWSL TYIASWFSGF TLAILGLLGV FSVPKVYESN 180
  181 QEAIDPHLAT ISGHLKNVQN IIDEKLPFLR SAPVAAEEKK DQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run hcp-2 hcp2 ip from december Cheeseman, I.M., et al. (2005)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..135] PSI-BLAST 15.0 No description for 2g31A was found.
    2 View Details [136..222] MSA 5.120991 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle