YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ret-1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQTRFVNKK YSKQPTWVPA TDFPGKILDV IYWRDAKKSA IVLSLALLVL FVLAKYPLLT  60
   61 VVTYSLLLAL GAAAGFRVFK KVEAQIKKTD SEHPFSEILA QDLTLPQEKV HAQADVFVEH 120
  121 ATCIANKLKK LVFVESPLES IKFGLVLWSL TYIASWFSGF TLAILGLLGV FSVPKVYESN 180
  181 QEAIDPHLAT ISGHLKNVQN IIDEKLPFLR SAPVAAEEKK DQ

Type	Start	End	Confidence
Cytoplasmic	1	38	0.92
Transmembrane Helix	39	54	0.88
Non-Cytoplasmic	55	60	0.50
Transmembrane Helix	61	79	0.75
Cytoplasmic	80	147	0.72
Transmembrane Helix	148	171	0.85
Non-Cytoplasmic	172	222	0.72