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Protein Overview: CE14458

General Information:
Name(s) found: CE14458 [WormBase]
Description(s) found:
Found 19 descriptions.
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  • WBGene00012209 locus:hmg-20 status:Confirmed UniProt:Q9XVG8 protein_id:CAB03465.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 386 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEALink to PubMed article]
    Biological Process: regulation of transcription, DNA-dependent [IEALink to PubMed article]
    chromosome segregation [IMPLink to PubMed article]
    Molecular Function: DNA binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRPRRSDSTT GPAAKSLPTS DVEEDEAAPD LKAESEDVTS SEEMQNKNPV SAPEKRAKTA  60
   61 SFSPPPALSP AHSIQMENEE IEVKMEVDSD EEEKKLPKIT EKRAKMVYKK KPEKEKEAVP 120
  121 FIDPNAPKRN RSGYVHFIIH RRASYSKAVM SQREINISLA ADWQKLTAEE RIPFQQRADE 180
  181 EKVKYLELME EYKKTDSHKE FQKKRAKFLS SQSNGSKNAK KRRQADSDDD TPNVQIPFPK 240
  241 PSVFCPLLSP EPATSSSTSG LQYSGPIFTP EFMTYNKTRD TYRRQLAIER SHVEHELEAL 300
  301 HQHDMDVRIE QQETRIREAD EKIEETMAKM RTVLAAVPGA KDHLTSIDAL ATWLESLTHL 360
  361 GAQNSTKKSV KEAVNKNAKS IVQMKK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..105] PSI-BLAST 7.0 NMR STRUCTURE OF RAT HMG1 HMGA FRAGMENT
    2 View Details [106..221] PSI-BLAST 17.221849 No description for 2gzkA was found.
    3 View Details [222..386] PSI-BLAST 6.221849 Solution structure of the 6th HMG box of mouse UBF1

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  2.26567769591593 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.818311652354687 bayes_pls_golite062009
  • DNA binding
    		•  0.811818342611352 bayes_pls_golite062009
  • protein binding
    		•  0.751190715138185 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.381276648599631 bayes_pls_golite062009
    2
    Term Confidence Notes
  • binding
    		•  2.26567769591593 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.818311652354687 bayes_pls_golite062009
  • DNA binding
    		•  0.811818342611352 bayes_pls_golite062009
  • protein binding
    		•  0.751190715138185 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.381276648599631 bayes_pls_golite062009
    3
    Term Confidence Notes
  • binding
    		•  2.26567769591593 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.818311652354687 bayes_pls_golite062009
  • DNA binding
    		•  0.811818342611352 bayes_pls_golite062009
  • protein binding
    		•  0.751190715138185 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.381276648599631 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle