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Protein Overview: sup-12

General Information:
Name(s) found: sup-12 / CE13934 [WormBase]
Description(s) found:
Found 21 descriptions.
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  • WBGene00006321 locus:sup-12 status:Confirmed UniProt:O45189 protein_id:CCD71425.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 248 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    Biological Process: regulation of mRNA processing [IMP]
    regulation of actin cytoskeleton organization [IGI]
    locomotion [IGI]
    Molecular Function: nucleic acid binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYGQVQDPLV HAAAAALAQS TNAEPVVGSR DTMFTKIFVG GLPYHTSDKT LHEYFEQFGD  60
   61 IEEAVVITDR NTQKSRGYGF VTMKDRASAE RACKDPNPII DGRKANVNLA YLGAKPRTNV 120
  121 QLAALAAGQV QLPLTTQLQA LFQPRMGLPQ MYYPTVTGLV NPLMAQQGAA AQQQLFDYNA 180
  181 LAAVMNPQAA AAYGIQSQGK FAAAPTTIEQ YAAYPAGYGL VPQSAYNIGN PQLQQLAAAQ 240
  241 QQLEHQRV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..132] PSI-BLAST 24.39794 Solution Structure of the RNA recognition motif in RNA-binding region containing protein 1
    2 View Details [133..248] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • RNA binding
    		•  3.75748736237159 bayes_pls_golite062009
  • nucleic acid binding
    		•  3.30499161454806 bayes_pls_golite062009
  • mRNA binding
    		•  2.67679675039933 bayes_pls_golite062009
  • binding
    		•  2.30438455421982 bayes_pls_golite062009
    		• 0.61507045441317 bayes_pls_golite062009
  • single-stranded RNA binding
    		•  0.61170301639809 bayes_pls_golite062009
  • protein binding
    		•  0.403675976995418 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.361110886317161 bayes_pls_golite062009
  • DNA binding
    		•  0.139895000724487 bayes_pls_golite062009
  • poly-pyrimidine tract binding
    		•  0.0800614106161897 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
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