| Protein: | sup-12 |
| Organism: | Caenorhabditis elegans |
| Length: | 248 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sup-12.
| Description | E-value | Query Range |
Subject Range |
|
|
151.0 | [0..2] | [228..233] |
|
|
151.0 | [0..2] | [224..233] |
|
|
148.0 | [0..9] | [248..42] |
|
|
148.0 | [0..22] | [248..54] |
|
|
147.0 | [0..2] | [227..162] |
|
Region A: Residues: [1-132] |
1 11 21 31 41 51
| | | | | |
1 MYGQVQDPLV HAAAAALAQS TNAEPVVGSR DTMFTKIFVG GLPYHTSDKT LHEYFEQFGD 60
61 IEEAVVITDR NTQKSRGYGF VTMKDRASAE RACKDPNPII DGRKANVNLA YLGAKPRTNV 120
121 QLAALAAGQV QL
|
| Detection Method: |  |
| Confidence: | 24.39794 |
| Match: | 2cqdA |
| Description: | Solution Structure of the RNA recognition motif in RNA-binding region containing protein 1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 3.75748736237159 | bayes_pls_golite062009 |
| nucleic acid binding | 3.30499161454806 | bayes_pls_golite062009 |
| mRNA binding | 2.67679675039933 | bayes_pls_golite062009 |
| binding | 2.30438455421982 | bayes_pls_golite062009 |
| 0.61507045441317 | bayes_pls_golite062009 | |
| single-stranded RNA binding | 0.61170301639809 | bayes_pls_golite062009 |
| protein binding | 0.403675976995418 | bayes_pls_golite062009 |
| transcription regulator activity | 0.361110886317161 | bayes_pls_golite062009 |
| DNA binding | 0.139895000724487 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 0.0800614106161897 | bayes_pls_golite062009 |
|
Region A: Residues: [133-248] |
1 11 21 31 41 51
| | | | | |
1 PLTTQLQALF QPRMGLPQMY YPTVTGLVNP LMAQQGAAAQ QQLFDYNALA AVMNPQAAAA 60
61 YGIQSQGKFA AAPTTIEQYA AYPAGYGLVP QSAYNIGNPQ LQQLAAAQQQ LEHQRV
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
