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Protein Overview: asd-2

General Information:
Name(s) found: asd-2 / CE13896 [WormBase]
Description(s) found:
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  • WBGene00006423 locus:asd-2 status:Confirmed UniProt:G5EFG9 protein_id:CCD67594.1 [WormBase]
  • pir||T15136 hypothetical protein T21G5.5 - Caenorhabditis elegans [NCBI NR]
  • gi|71991109|ref|NP_001021626.1| Alternative Splicing Defective family member (asd-2) [Caenorhabditis elegans] [NCBI NR]
  • gi|31746547|gb|AAP68907.1| Alternative splicing defective protein 2, isoform b [Caenorhabditis elegans] [NCBI NR]
  • gi|156856561|gb|ABU96119.1| alternative splicing defective family member 2a [Caenorhabditis elegans] [NCBI NR]
  • [wormpep67.fasta]
  • Temporarily assigned gene name protein 44, isoform b [Caenorhabditis elegans]gi|7508156|pir||T15136 hypothetical protein T21G5.5 - Caenorhabditis elegans [nrdb_11152004_Chlamydomonas]
  • CE13896 WBGene00006423 locus:star-2 status:Partially_confirmed TR:Q7Z153 protein_id:AAP68907.1 [wormpep150.fasta]
  • 13896 WBGene00006423 locus:tag-44 status:Partially_confirmed TR:Q7Z153 protein_id:AAP68907.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • CE13896 WBGene00006423 locus:tag-44 status:Partially_confirmed TR:Q7Z153 protein_id:AAP68907.1 [wormpep132.fasta]
  • 13896 WBGene00006423 locus:star-2 status:Partially_confirmed TR:Q7Z153 protein_id:AAP68907.1 [wormpep150-phg-orf-ecoli-rand.fasta]
  • status:Partially_confirmed TR:Q7Z153 protein_id:AAP68907.1 [wormpep115.fasta.reversed]
  • CE13896 status:Predicted TR:O02065 protein_id:AAB52897.1 [wormpep80.hongbin]
  • CE13896 WBGene00006423 locus:asd-2 status:Confirmed UniProt:Q7Z153_CAEEL protein_id:AAP68907.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE13896 WBGene00006423 locus:asd-2 status:Confirmed UniProt:Q7Z153_CAEEL protein_id:AAP68907.1| [wormORF-contam.fasta]
  • Star (rna binding protein) family protein 2, isoform b [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • STAR (RNA binding protein) family member (star-2) [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE13896 WBGene00006423 locus:asd-2 status:Partially_confirmed TR:Q7Z153 protein_id:AAP68907.1 [WormBase_C-elegans_wp180_08-19-2007_reversed.fasta]
  • CE13896 WBGene00006423 locus:asd-2 status:Confirmed UniProt:Q7Z153 protein_id:AAP68907.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE13896 WBGene00006423 locus:asd-2 status:Confirmed UniProt:G5EFG9 protein_id:CCD67594.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • Isoform of D4YW53, Alternative splicing defective family member 2a OS=Caenorhabditis elegans GN=asd-2 PE=1 SV=1 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 403 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: nematode larval development [IMPLink to PubMed article]
    locomotion [IMPLink to PubMed article]
    positive regulation of growth rate [IMPLink to PubMed article]
    oviposition [IMPLink to PubMed article]
    positive regulation of locomotion [IMPLink to PubMed article]
    Molecular Function: RNA binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTHASTDLLT PNGSANGVST SQQQQYSAEY LSQLLKDKKQ LAAFPNVFHH LERLADEEIN  60
   61 KVRVVLFQCE FSKESAPLPD AEGDSTVHTE KVFVPAKEHP DYNFVGRILG PRGMTAKQLE 120
  121 QETGCKIMVR GRGSMRDKKK EELNRGKPNW EHLSEELHVL IQCEDTENRA KVKLMRAVEE 180
  181 VRKLLVPAPE GEDDLKRKQL MELAIINGTY RSGTDQSALA AAQLAAVKHQ QQPFAAALQA 240
  241 AALQRGVLPM MANGLSRSPT MAVCGAPIVM SPSGRASSAG ATATSQAALI MQQQSQLHAA 300
  301 NAGNAALQQQ AALLQQQQAA EYQQLLLSQA GLYDFSAMQQ QYAAVGQNAA VAAAQAQAQA 360
  361 QYGALAAAAA ANSAGNQQYA DYAGVDLTSQ QSAHGGYYVR RWA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..81] deduced N/A No confident structure predictions are available.
    2 View Details [82..246] PSI-BLAST 48.0 Solution structure of the KH-QUA2 region of the Xenopus STAR-GSG Quaking protein.
    3 View Details [247..403] MSA 22.220997 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • RNA binding
    		•  3.79066340213332 bayes_pls_golite062009
  • nucleic acid binding
    		•  3.1702329067388 bayes_pls_golite062009
  • mRNA binding
    		•  2.45375256113953 bayes_pls_golite062009
  • binding
    		•  2.12000404411947 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.720255318931267 bayes_pls_golite062009
  • catalytic activity
    		•  0.483552478758071 bayes_pls_golite062009
  • protein binding
    		•  0.446932489882167 bayes_pls_golite062009
  • DNA binding
    		•  0.369815489813612 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.94

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle