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Protein Overview: avr-15

General Information:
Name(s) found: avr-15 / CE13573 [WormBase]
Description(s) found:
Found 19 descriptions.
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  • WBGene00000233 locus:avr-15 status:Confirmed UniProt:Q95PJ6 protein_id:CAB03329.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 478 amino acids

    Gene Ontology:
    Cellular Component: postsynaptic membrane [IEALink to PubMed article]
    membrane [IEALink to PubMed article]
    integral to membrane [IEALink to PubMed article]
    Biological Process: regulation of pharyngeal pumping [IGILink to PubMed article][IMPLink to PubMed articleLink to PubMed article]
    locomotion involved in locomotory behavior [IGILink to PubMed article][IMPLink to PubMed article]
    ion transport [IEALink to PubMed article]
    regulation of action potential [IMPLink to PubMed article]
    transport [IEALink to PubMed article]
    Molecular Function: neurotransmitter receptor activity [IEALink to PubMed article]
    extracellular ligand-gated ion channel activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTSFIRRLA FVGLLLGVHA YHSRPKSEEH SPKHAASSSD LFEDDDQSTT LESIARLSAP  60
   61 AHVPIEQPQT SDTEILEHLL TRGYDHRVRP PGEDGTIHGG PVVVSVNMLL RSISKIDNVN 120
  121 MEYSVQLTFR ESWVDKRLSF GVKGDAQPDF LILTAGQEIW MPDSFFQNEK QAYKHMIDKP 180
  181 NVLIRVHKDG TILYSVRISL VLSCPMHLQY YPMDVQQCFI DLASYAYTTK DIEYVWKEET 240
  241 PVQLKAGLSS SLPSFQLTNT STTYCTSKTN TGSYSCLRTI IQLRRQFSYY LLQLYIPSCM 300
  301 LVIVSWVSFW IDRTAVPARV TLGVTTLLTM TTQSSGINAK LPPVAYIKAI DVWIGACMTF 360
  361 IFCALLEFAW VTYIANKQDA NKRARTEREK AELPFLQNSH NDVWVPREVA EQEREVMTVR 420
  421 MNRRQTNSVW KWIKTKTEWN DKSKRADLIS RVMFPVLFLT FNISYWTHYG QYGVAIST

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..388] PSI-BLAST 66.0 Refined structure of the nicotinic acetylcholine receptor at 4A resolution.
    2 View Details [389..478] PSI-BLAST 22.154902 Acetylcholine receptor protein, alpha chain


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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