YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	avr-15
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTSFIRRLA FVGLLLGVHA YHSRPKSEEH SPKHAASSSD LFEDDDQSTT LESIARLSAP  60
   61 AHVPIEQPQT SDTEILEHLL TRGYDHRVRP PGEDGTIHGG PVVVSVNMLL RSISKIDNVN 120
  121 MEYSVQLTFR ESWVDKRLSF GVKGDAQPDF LILTAGQEIW MPDSFFQNEK QAYKHMIDKP 180
  181 NVLIRVHKDG TILYSVRISL VLSCPMHLQY YPMDVQQCFI DLASYAYTTK DIEYVWKEET 240
  241 PVQLKAGLSS SLPSFQLTNT STTYCTSKTN TGSYSCLRTI IQLRRQFSYY LLQLYIPSCM 300
  301 LVIVSWVSFW IDRTAVPARV TLGVTTLLTM TTQSSGINAK LPPVAYIKAI DVWIGACMTF 360
  361 IFCALLEFAW VTYIANKQDA NKRARTEREK AELPFLQNSH NDVWVPREVA EQEREVMTVR 420
  421 MNRRQTNSVW KWIKTKTEWN DKSKRADLIS RVMFPVLFLT FNISYWTHYG QYGVAIST

Type	Start	End	Confidence
Signal Peptide	1	20	0.99
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	288	0.99
Transmembrane Helix	289	310	0.93
Cytoplasmic	311	317	0.83
Transmembrane Helix	318	337	0.89
Non-Cytoplasmic	338	351	0.78
Transmembrane Helix	352	374	0.92
Cytoplasmic	375	447	0.99
Transmembrane Helix	448	469	0.84
Non-Cytoplasmic	470	478	0.88