| Protein: | avr-15 |
| Organism: | Caenorhabditis elegans |
| Length: | 478 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for avr-15.
| Description | E-value | Query Range |
Subject Range |
|
|
366.0 | [0..1] | [478..1] |
|
Region A: Residues: [1-388] |
1 11 21 31 41 51
| | | | | |
1 MSTSFIRRLA FVGLLLGVHA YHSRPKSEEH SPKHAASSSD LFEDDDQSTT LESIARLSAP 60
61 AHVPIEQPQT SDTEILEHLL TRGYDHRVRP PGEDGTIHGG PVVVSVNMLL RSISKIDNVN 120
121 MEYSVQLTFR ESWVDKRLSF GVKGDAQPDF LILTAGQEIW MPDSFFQNEK QAYKHMIDKP 180
181 NVLIRVHKDG TILYSVRISL VLSCPMHLQY YPMDVQQCFI DLASYAYTTK DIEYVWKEET 240
241 PVQLKAGLSS SLPSFQLTNT STTYCTSKTN TGSYSCLRTI IQLRRQFSYY LLQLYIPSCM 300
301 LVIVSWVSFW IDRTAVPARV TLGVTTLLTM TTQSSGINAK LPPVAYIKAI DVWIGACMTF 360
361 IFCALLEFAW VTYIANKQDA NKRARTER
|
| Detection Method: |  |
| Confidence: | 66.0 |
| Match: | 2bg9A |
| Description: | Refined structure of the nicotinic acetylcholine receptor at 4A resolution. |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [389-478] |
1 11 21 31 41 51
| | | | | |
1 EKAELPFLQN SHNDVWVPRE VAEQEREVMT VRMNRRQTNS VWKWIKTKTE WNDKSKRADL 60
61 ISRVMFPVLF LTFNISYWTH YGQYGVAIST
|
| Detection Method: | |
| Confidence: | 22.154902 |
| Match: | 1oedA |
| Description: | Acetylcholine receptor protein, alpha chain |
Matching Structure (courtesy of the PDB): |
|
