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Protein Overview: CE13385

General Information:
Name(s) found: CE13385 [WormBase]
Description(s) found:
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  • WBGene00020320 status:Confirmed UniProt:P91437 protein_id:CCD65917.1 [WormBase]
  • pir||T25863 hypothetical protein T07F8.4 - Caenorhabditis elegans [NCBI NR]
  • gi|17536113|ref|NP_495478.1| hypothetical protein T07F8.4 [Caenorhabditis elegans] [NCBI NR]
  • gi|1708761|gb|AAB38099.1| Hypothetical protein T07F8.4 [Caenorhabditis elegans] [NCBI NR]
  • [wormpep67.fasta]
  • CE13385 WBGene00020320 status:Confirmed TR:P91437 protein_id:AAB38099.1 [wormpep150.fasta]
  • 13385 WBGene00020320 status:Confirmed TR:P91437 protein_id:AAB38099.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • ELM2 domain and Myb DNA-binding domain containing protein (39.2 kD) (2H420) [Caenorhabditis elegans]gi|1708761|gb|AAB38099.1| Hypothetical protein T07F8.4 [Caenorhabditis elegans]gi|7507401|pir||T25863 hypothetical protein T07F8.4 - Caenorhabditis elega [nrdb_11152004_Chlamydomonas]
  • status:Confirmed TR:P91437 protein_id:AAB38099.1 [wormpep115.fasta.reversed]
  • CE13385 status:Partially_confirmed TR:P91437 protein_id:AAB38099.1 [wormpep80.hongbin]
  • CE13385 WBGene00020320 status:Confirmed UniProt:P91437_CAEEL protein_id:AAB38099.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE13385 WBGene00020320 status:Confirmed UniProt:P91437_CAEEL protein_id:AAB38099.1| [wormORF-contam.fasta]
  • Hypothetical protein T07F8.4 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • T07F8.4 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE13385 WBGene00020320 status:Confirmed UniProt:P91437 protein_id:AAB38099.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE13385 WBGene00020320 status:Confirmed UniProt:P91437 protein_id:CCD65917.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • Uncharacterized protein OS=Caenorhabditis elegans GN=CELE_T07F8.4 PE=4 SV=1 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 345 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEALink to PubMed article]
    Biological Process: body morphogenesis [IMP]
    reproduction [IMP]
    Molecular Function: DNA binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDEEGSRSSI TDEEDYVDDN DNGEDYEATI EEEELLDEGD YEDELKDLED EGEMSIEELQ  60
   61 RKYGYRPAEN SSANNEDTEI AEENVGESSS AAAEPHDSTI FDMGNSMSGF DDDDDDYAPP 120
  121 PDPWKRSIRV DPVLFQADVP LFNEATVEES AREDDTILWT IDQTNQPSDE VIDNYLKDVV 180
  181 GLRKAHDQPC PPAGTESRDD EDALCALYRS NFDTEKAKES FPFPHINAPF RTVRSDALGF 240
  241 DESEAKAFEE SLELYGKDFS LIRRLRLPYR KVGELIEYYY QWKLTPGYRV WRDAHPQHAP 300
  301 VVQPHLSAAW HQQVAQLEDQ NGQTGFVEAS FSEPSTSEEP STLTN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..127] MSA 6.081997 View MSA. No confident structure predictions are available.
    2 View Details [128..223] Pfam 10.017729 No description for PF01448.15 was found. No confident structure predictions are available.
    3 View Details [224..345] PSI-BLAST 14.154902 Solution structure of the myb-like DNA-binding domain of mouse MTA3 protein

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • binding
    		•  1.25140430108186 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.0511502747891 bayes_pls_golite062009
  • DNA binding
    		•  0.851610480849472 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.619804046637637 bayes_pls_golite062009
  • transcription factor activity
    		•  0.55844875619394 bayes_pls_golite062009
  • protein binding
    		•  0.134872960372588 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle