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Protein Overview: CE13042

General Information:
Name(s) found: CE13042 [WormBase]
Description(s) found:
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  • WBGene00020157 status:Partially_confirmed UniProt:O16976 protein_id:CCD72451.1 [WormBase]
  • pir||T32204 hypothetical protein T02B11.6 - Caenorhabditis elegans [NCBI NR]
  • gi|2384879|gb|AAB69904.1| Hypothetical protein T02B11.6 [Caenorhabditis elegans] [NCBI NR]
  • gi|17563754|ref|NP_503350.1| hypothetical protein T02B11.6 [Caenorhabditis elegans] [NCBI NR]
  • [wormpep67.fasta]
  • CE13042 WBGene00020157 status:Partially_confirmed TR:O16976 protein_id:AAB69904.1 [wormpep150.fasta]
  • 13042 WBGene00020157 status:Partially_confirmed TR:O16976 protein_id:AAB69904.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • general substrate transporter family member (5B364) [Caenorhabditis elegans]gi|2384879|gb|AAB69904.1| Hypothetical protein T02B11.6 [Caenorhabditis elegans]gi|7506926|pir||T32204 hypothetical protein T02B11.6 - Caenorhabditis elegans [nrdb_11152004_Chlamydomonas]
  • status:Partially_confirmed TR:O16976 protein_id:AAB69904.1 [wormpep115.fasta.reversed]
  • CE13042 status:Predicted TR:O16976 protein_id:AAB69904.1 [wormpep80.hongbin]
  • CE13042 WBGene00020157 status:Partially_confirmed UniProt:O16976_CAEEL protein_id:AAB69904.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE13042 WBGene00020157 status:Partially_confirmed UniProt:O16976_CAEEL protein_id:AAB69904.1| [wormORF-contam.fasta]
  • Hypothetical protein T02B11.6 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • T02B11.6 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE13042 WBGene00020157 status:Partially_confirmed UniProt:O16976 protein_id:AAB69904.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE13042 WBGene00020157 status:Partially_confirmed UniProt:O16976 protein_id:CCD72451.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
    • Organism: Caenorhabditis elegans
    Length: 466 amino acids

    Gene Ontology:
    Cellular Component: integral to membrane [IEALink to PubMed article]
    Biological Process: inorganic anion transport [IEALink to PubMed article]
    drug transport [IEALink to PubMed article]
    phosphate transport [IEALink to PubMed article]
    transport [IEALink to PubMed article]
    Molecular Function: inorganic anion transmembrane transporter activity [IEALink to PubMed article]
    phosphate transmembrane transporter activity [IEALink to PubMed article]
    transporter activity [IEALink to PubMed article]
    drug transmembrane transporter activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTQSSIHSEK MCLPKLPYYR FIVMMVAFFC LMSIFSNYTI MNFAFICMKN DMQGAVQGAN  60
   61 GTLQSIYDYT STGKAQLIWA VAIGTIIGTV PYNWMYVKYG AKNVFLSAGI ISLVATSCTP 120
  121 FAAGNSYWLL LAIRLIQGIA YAADFAVIGI ICVKWAPHDE VAFFVSVLTV FSPFATVITT 180
  181 AVTGFLCTSS LGWRFSFYVH SIAGALCFVL WYFVYSDDPL SHSSVTSREL ANIQKGKSAA 240
  241 HFSKRREIPY LKMITNSALA CTWFNAFMDL SMSIMIITYS PIYFHTIEQT AFIIGITNFA 300
  301 QLPFKFGAAF ISDRITSINP KAKMLIFNTI SCGIVSILFG GLGFISKDQK WVAMFLLIAV 360
  361 NCLMSTNCAG FYQCGRHVSQ QFADVVIAAI QFCKCLALFF VPAIVAATVT DESDRGQWSH 420
  421 AFLVMSGLLL VANFSAYFFF TDQPADFTKC EEPHEFPLKK SIEAHD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..466] PSI-BLAST 42.69897 Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • substrate-specific transmembrane transporter activity
    		•  5.46247398538901 bayes_pls_golite062009
  • ion transmembrane transporter activity
    		•  4.58978526526921 bayes_pls_golite062009
  • cation transmembrane transporter activity
    		•  4.31967711223954 bayes_pls_golite062009
  • transporter activity
    		•  4.09176719149278 bayes_pls_golite062009
  • anion transmembrane transporter activity
    		•  3.94605227012838 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  3.59744164024479 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  3.5865018981083 bayes_pls_golite062009
  • inorganic anion transmembrane transporter activity
    		•  2.52916479889426 bayes_pls_golite062009
  • phosphate transmembrane transporter activity
    		•  1.78662033436109 bayes_pls_golite062009
  • active transmembrane transporter activity
    		•  1.59419818573076 bayes_pls_golite062009
  • secondary active transmembrane transporter activity
    		•  1.22264637452409 bayes_pls_golite062009
  • polyol transmembrane transporter activity
    		•  0.924836669821548 bayes_pls_golite062009
  • alcohol transmembrane transporter activity
    		•  0.924836669821548 bayes_pls_golite062009
  • binding
    		•  0.818732184064642 bayes_pls_golite062009
  • glycerol transmembrane transporter activity
    		•  0.812001619402678 bayes_pls_golite062009
  • solute:cation symporter activity
    		•  0.74591237387473 bayes_pls_golite062009
  • symporter activity
    		•  0.74591237387473 bayes_pls_golite062009
  • cation:sugar symporter activity
    		•  0.143419068761182 bayes_pls_golite062009
  • sugar:hydrogen symporter activity
    		•  0.143419068761182 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle