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Protein Overview: pqn-51

General Information:
Name(s) found: pqn-51 / CE12128 [WormBase]
Description(s) found:
Found 18 descriptions.
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  • WBGene00004136 locus:pqn-51 status:Confirmed UniProt:O44625 protein_id:CCD64397.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 354 amino acids

    Gene Ontology:
    Cellular Component: transcription factor TFIIA complex [IEALink to PubMed article]
    Biological Process: embryonic development ending in birth or egg hatching [IMPLink to PubMed article]
    transcription initiation from RNA polymerase II promoter [IEALink to PubMed article]
    Molecular Function: RNA polymerase II transcription factor activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAHGNGIAEL YKSVMADVIA NMKEAFLDEN IDVDVLSQLR KEWEDKVNSS GCVDLESNAP  60
   61 PPAPRQQHHV PPSAVRPNPM PPQRPVAQQP VRALSALHAA HIGDAPIRMA YTGQPTQHPS 120
  121 QVRMFNPQFQ GGIHFQPGQV FVVQQPNGQN IPMSIMPNQI PQHRIIHQGQ PQQAQQQQPQ 180
  181 QGNQLTHMNQ MDGNVGSESD GEGPSGPVKL APKKTKCSLR VRGSGASEKK AMKVLGSLLK 240
  241 DFQLDGGGGG MSDSSSEDEP DDDDDPLRRI ADRMGNGEVE DGDQVAEEEP LNSEDDQSDD 300
  301 EDLTMLFEAD NVVMCQFEKV NRARTKWKFQ LKDGIMHIDK KDYCFQKCTG EAEW

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..105] FFAS03 4.21 Structure of a Yeast TFIIA/TBP/TATA-box DNA Complex
    2 View Details [106..262] PSI-BLAST 7.0 Sec24
    3 View Details [263..354] PSI-BLAST 37.09691 HUMAN TFIIA/TBP/DNA COMPLEX

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • RNA polymerase II transcription factor activity
    		•  1.07041965857219 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.646609146750617 bayes_pls_golite062009
  • binding
    		•  0.144827418964242 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle