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Protein Overview: rpt-4

General Information:
Name(s) found: rpt-4 / CE09608 [WormBase]
Description(s) found:
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  • WBGene00004504 locus:rpt-4 Probable 26S protease regulatory subunit 10B status:Confirmed UniProt:O17071 protein_id:CCD62358.1 [WormBase]
  • gi|7499759|pir||T32268 hypothetical protein F23F1.8 - Caenorhabditis elegans [NCBI NR]
  • gi|71987372|ref|NP_001022114.1| proteasome Regulatory Particle, ATPase-like family member (rpt-4) [Caenorhabditis elegans] [NCBI NR]
  • gi|55710062|gb|AAV58871.1| Proteasome regulatory particle, atpase-like protein 4, isoform b [Caenorhabditis elegans] [NCBI NR]
  • [wormpep67.fasta]
  • hypothetical protein F23F1.8 - Caenorhabditis elegans [nrdb_11152004_Chlamydomonas]
  • CE09608 WBGene00004504 locus:rpt-4 status:Confirmed SW:O17071 protein_id:AAV58871.1 [wormpep150.fasta]
  • 09608 WBGene00004504 locus:rpt-4 status:Confirmed SW:O17071 protein_id:AAV58871.1 [wormpep150-phg-orf-ecoli-rand.fasta]
  • CE09608 WBGene00004504 locus:rpt-4 status:Confirmed protein_id:AAV58871.1 [WormBase_C-elegans_na_01-20-2005_combined_reversed.fasta]
  • CE09608 WBGene00004504 locus:rpt-4 status:Confirmed UniProt:PRS10_CAEEL protein_id:AAV58871.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE09608 WBGene00004504 locus:rpt-4 status:Confirmed UniProt:PRS10_CAEEL protein_id:AAV58871.1| [wormORF-contam.fasta]
  • proteasome Regulatory Particle, ATPase-like family member (rpt-4) [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Proteasome regulatory particle, atpase-like protein 4, isoform b [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE09608 WBGene00004504 locus:rpt-4 status:Confirmed UniProt:O17071 protein_id:AAV58871.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE09608 WBGene00004504 locus:rpt-4 status:Confirmed UniProt:O17071 protein_id:CCD62358.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • CE09608 WBGene00004504 locus:rpt-4 status:Confirmed UniProt:O17071 protein_id:CCD62358.1 Probable 26S protease regulatory subunit 10B [wormpep246-ecoli-contam.fasta]
  • Isoform of O17071, Isoform b of Probable 26S protease regulatory subunit 10B OS=Caenorhabditis elegans GN=rpt-4 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 398 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEALink to PubMed article]
    proteasome regulatory particle, base subcomplex [ISSLink to PubMed article]
    cytoplasm [IEALink to PubMed article]
    membrane [IEALink to PubMed article]
    Biological Process: DNA repair [IEALink to PubMed article]
    locomotion [IMPLink to PubMed article]
    nematode larval development [IMPLink to PubMed article]
    protein catabolic process [IEALink to PubMed article]
    positive regulation of growth rate [IMPLink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed articleLink to PubMed articleLink to PubMed articleLink to PubMed article]
    post-embryonic body morphogenesis [IMPLink to PubMed article]
    protein transport [IEALink to PubMed article]
    DNA recombination [IEALink to PubMed article]
    reproduction [IMPLink to PubMed articleLink to PubMed article]
    Molecular Function: nucleotide binding [IEALink to PubMed article]
    ATPase activity [IEALink to PubMed article]
    ATP binding [IEALink to PubMed article]
    DNA binding [IEALink to PubMed article]
    protein binding [IEALink to PubMed article][IPILink to PubMed article]
    nucleoside-triphosphatase activity [IEALink to PubMed article]
    four-way junction helicase activity [IEALink to PubMed article]
    metalloendopeptidase activity [IEALink to PubMed article]
    hydrolase activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVEPTGPAIV EDERTKALNS YRRKLAECRD IEQKLKDLRK KESEMTKQFD KSENDIKSLQ  60
   61 SVGQIVGEVL KQLSEEKFIV KATNGPRYVV GCRRSINKEE LKQGTRVSLD MTTLTIMRQL 120
  121 PREVDPLVYK MSHEDPGNIS YSDVGGLAEQ IRELREVVEL PLINPELFKR VGITPPKGCL 180
  181 LFGPPGTGKT LLARAVASQL DCNFLKVVSS AIVDKYIGES ARMIREMFNY ARDHQPCIVF 240
  241 MDEIDAIGGR RFSEGTSADR EIQRTLMELL NQLDGFDSLG KVKVIMATNR PDTLDPALLR 300
  301 PGRLDRKIEI GLPNEQSRLE ILKIHSNKIT KHGEIDFEAV VKLSDGFSAA DLRNVCTEAG 360
  361 MFAIRAEREF VIDEDFMKAV RKVGDAKRLE TKLDYKPV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..398] PSI-BLAST 85.30103 VCP/p97


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle