YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: CE09232

General Information:
Name(s) found: CE09232 [WormBase]
Description(s) found:
SHOW ONLY BEST
  • WBGene00017238 U1 small nuclear ribonucleoprotein C status:Confirmed UniProt:P90815 protein_id:CCD67653.1 [WormBase]
  • pir||T29485 hypothetical protein F08B4.7 - Caenorhabditis elegans [NCBI NR]
  • gi|17539712|ref|NP_501490.1| hypothetical protein F08B4.7 [Caenorhabditis elegans] [NCBI NR]
  • gi|1705482|gb|AAB37732.1| Hypothetical protein F08B4.7 [Caenorhabditis elegans] [NCBI NR]
  • U1 small nuclear ribonucleoprotein C OS=Caenorhabditis elegans GN=F08B4.7 PE=3 SV=1 [Swiss-Prot]
  • [wormpep67.fasta]
  • CE09232 WBGene00017238 U1 small nuclear ribonucleoprotein C status:Confirmed TR:P90815 protein_id:AAB37732.1 [wormpep150.fasta]
  • 09232 WBGene00017238 U1 small nuclear ribonucleoprotein C status:Confirmed TR:P90815 protein_id:AAB37732.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • u1 small nuclear ribonucleoprotein C (15.6 kD) (4J452) [Caenorhabditis elegans]gi|1705482|gb|AAB37732.1| Hypothetical protein F08B4.7 [Caenorhabditis elegans]gi|7498604|pir||T29485 hypothetical protein F08B4.7 - Caenorhabditis elegans [nrdb_11152004_Chlamydomonas]
  • U1 small nuclear ribonucleoprotein C status:Confirmed TR:P90815 protein_id:AAB37732.1 [wormpep115.fasta.reversed]
  • CE09232 U1 small nuclear ribonucleoprotein C status:Confirmed TR:P90815 protein_id:AAB37732.1 [wormpep80.hongbin]
  • CE09232 WBGene00017238 U1 small nuclear ribonucleoprotein C status:Confirmed UniProt:P90815_CAEEL protein_id:AAB37732.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE09232 WBGene00017238 U1 small nuclear ribonucleoprotein C status:Confirmed UniProt:P90815_CAEEL protein_id:AAB37732.1| [wormORF-contam.fasta]
  • F08B4.7 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Hypothetical protein F08B4.7 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE09232 WBGene00017238 U1 small nuclear ribonucleoprotein C status:Confirmed UniProt:P90815 protein_id:AAB37732.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE09232 WBGene00017238 U1 small nuclear ribonucleoprotein C status:Confirmed UniProt:P90815 protein_id:CCD67653.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • CE09232 WBGene00017238 status:Confirmed UniProt:P90815 protein_id:CCD67653.1 U1 small nuclear ribonucleoprotein C [wormpep246-ecoli-contam.fasta]
    • Organism: Caenorhabditis elegans
    Length: 142 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEALink to PubMed article]
    Biological Process: positive regulation of growth rate [IMPLink to PubMed articleLink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed articleLink to PubMed article]
    gamete generation [IMPLink to PubMed article]
    Molecular Function: nucleic acid binding [IEALink to PubMed article]
    zinc ion binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKYYCDYCD TFLTHDSPSV RKTHNGGRKH KDNVRMFYQK WMEDQAQKLV DQTARAFATN  60
   61 RMQGAVPRTT MGMAPVPPVG HHPMMGGPPG MPMMAPRPFP GPGVGFPGAP GMPPFPGGPM 120
  121 GMAGPPGMPP MMPRPPQQFR PM

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..62] PSI-BLAST 33.69897 The structure of the zinc finger from the human spliceosomal protein U1C
    2 View Details [63..142] FFAS03 1.33 Crystal Structure of Rat Synapsin I C Domain Complexed to Ca.ATP

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.414217765611205 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle