YRC Public Data Repository - Protein Structure Prediction

Protein:	CE09232
Organism:	Caenorhabditis elegans
Length:	142 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE09232.

Description	E-value	Query Range	Subject Range
gi\|67971420 - gi\|67971420\|dbj\|BAE02052.1\| unnamed protein product [Macaca fascicularis]	143.0	[0..1]	[62..1]
usp103 - U1 snRNP-associated protein Usp103 RU1C_SCHPO - U1 small nuclear ribonucleoprotein C OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=usp10...	141.0	[0..1]	[119..1]
gi\|55670396 - gi\|55670396\|pdb\|1UW2\|A Chain A, The Structure Of The Zinc Finger From The Human Spliceosomal Protein...	138.0	[0..2]	[61..2]
gi\|109070829 - gi\|109070829\|ref\|XP_001111611.1\| PREDICTED: similar to U1 small nuclear ribonucleoprotein C (U1 snRN...	135.0	[0..1]	[62..166]
gi\|48128367, gi\|... - ref\|XP_396626.1\| similar to CG5454-PA [Apis mellifera], gi\|110758091\|ref\|XP_001120253.1\| PREDICTED: ...	133.0	[0..1]	[63..1]
gi\|94397362, gi\|... - gi\|94398338\|ref\|XP_983686.1\| PREDICTED: similar to U1 small nuclear ribonucleoprotein C (U1 snRNP pr...	131.0	[0..1]	[62..1]
gi\|73972600 - gi\|73972600\|ref\|XP_532115.2\| PREDICTED: similar to U1 small nuclear ribonucleoprotein C (U1 snRNP pr...	129.0	[0..1]	[62..90]
gi\|39946178, gi\|... - gi\|39946178\|ref\|XP_362626.1\| hypothetical protein MG08209.4 [Magnaporthe grisea 70-15], gb\|EAA57240....	128.0	[0..1]	[72..1]
gi\|109458031 - gi\|109458031\|ref\|XP_001076224.1\| PREDICTED: similar to Protein CXorf17 homolog [Rattus norvegicus]	127.0	[0..1]	[85..1]

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Predicted Domain #1

Region A:
Residues: [1-62]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKYYCDYCD TFLTHDSPSV RKTHNGGRKH KDNVRMFYQK WMEDQAQKLV DQTARAFATN  60
   61 RM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.69897
Match:	1uw2A
Description:	The structure of the zinc finger from the human spliceosomal protein U1C
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.414217765611205	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [63-142]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QGAVPRTTMG MAPVPPVGHH PMMGGPPGMP MMAPRPFPGP GVGFPGAPGM PPFPGGPMGM  60
   61 AGPPGMPPMM PRPPQQFRPM

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.33
Match:	1pk8A
Description:	Crystal Structure of Rat Synapsin I C Domain Complexed to Ca.ATP
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: