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Protein Overview: mrps-5

General Information:
Name(s) found: mrps-5 / CE09115 [WormBase]
Description(s) found:
Found 20 descriptions.
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  • WBGene00008452 locus:mrps-5 mitochondrial 40S ribosomal protein S5 status:Confirmed UniProt:Q93425 protein_id:CAB02879.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 418 amino acids

    Gene Ontology:
    Cellular Component: small ribosomal subunit [IEALink to PubMed article]
    ribosome [IEALink to PubMed article]
    intracellular [IEALink to PubMed article]
    Biological Process: nematode larval development [IMPLink to PubMed article]
    positive regulation of growth rate [IMPLink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed articleLink to PubMed articleLink to PubMed article]
    growth [IMPLink to PubMed article]
    translation [IEALink to PubMed article]
    Molecular Function: RNA binding [IEALink to PubMed article]
    structural constituent of ribosome [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRSGPELWK TLTSVSKSGQ KKGRRNTRQP VRPLNRFYRI GSSPMKIEFA GLNAPIRMRE  60
   61 TENQNLMSIA EQTEDEIRDS MGGTKKILEE RDTGKKKRNR EKLHPMERGF SGTQLVGQKL 120
  121 GAPPPLDGVN FDDFETYCLE VKRTSNMTNV FGRVHTMSAL VVTGNGRGLA GYAVGKAPIH 180
  181 RTTTAIINGM GMASRKLFHV ELHEGRTIYQ DFYAECRNTR VFAQRRPRGF GLTCHPRLIK 240
  241 ICEAIGIKDI YVKVEGSTKN YLALTHAFVT GLLNQETHQQ LAERKGLHVV EMSPSRHFLP 300
  301 QIVASPISTE LKTEETLEAL DRLNLDDFYG EGRYPLRKPK SLPFFSNLEG HLDARWRKHP 360
  361 FRNQESTMIR LIADNMVPRW TRDARAAWAD QRNERMTTGV EPMPLGIGLS HVVPKKDD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..125] MSA 3.116996 View MSA. No confident structure predictions are available.
    2 View Details [126..294] PSI-BLAST 47.39794 70S ribosome functional complex
    3 View Details [295..418] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • structural constituent of ribosome
    		•  6.7575603459566 bayes_pls_golite062009
  • structural molecule activity
    		•  6.24187874355454 bayes_pls_golite062009
  • RNA binding
    		•  3.5405508156591 bayes_pls_golite062009
  • binding
    		•  2.66771816762976 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.45216687077957 bayes_pls_golite062009
  • protein binding
    		•  1.33336414936007 bayes_pls_golite062009
  • DNA binding
    		•  0.770826702436345 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.420441899974488 bayes_pls_golite062009
  • double-stranded RNA binding
    		•  0.33006862628358 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle