| Protein: | mrps-5 |
| Organism: | Caenorhabditis elegans |
| Length: | 418 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mrps-5.
| Description | E-value | Query Range |
Subject Range |
|
|
447.0 | [0..1] | [418..19] |
|
Region A: Residues: [1-125] |
1 11 21 31 41 51
| | | | | |
1 MRRSGPELWK TLTSVSKSGQ KKGRRNTRQP VRPLNRFYRI GSSPMKIEFA GLNAPIRMRE 60
61 TENQNLMSIA EQTEDEIRDS MGGTKKILEE RDTGKKKRNR EKLHPMERGF SGTQLVGQKL 120
121 GAPPP
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [126-294] |
1 11 21 31 41 51
| | | | | |
1 LDGVNFDDFE TYCLEVKRTS NMTNVFGRVH TMSALVVTGN GRGLAGYAVG KAPIHRTTTA 60
61 IINGMGMASR KLFHVELHEG RTIYQDFYAE CRNTRVFAQR RPRGFGLTCH PRLIKICEAI 120
121 GIKDIYVKVE GSTKNYLALT HAFVTGLLNQ ETHQQLAERK GLHVVEMSP
|
| Detection Method: | |
| Confidence: | 47.39794 |
| Match: | 1p6gE |
| Description: | 70S ribosome functional complex |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| structural constituent of ribosome | 6.7575603459566 | bayes_pls_golite062009 |
| structural molecule activity | 6.24187874355454 | bayes_pls_golite062009 |
| RNA binding | 3.5405508156591 | bayes_pls_golite062009 |
| binding | 2.66771816762976 | bayes_pls_golite062009 |
| nucleic acid binding | 2.45216687077957 | bayes_pls_golite062009 |
| protein binding | 1.33336414936007 | bayes_pls_golite062009 |
| DNA binding | 0.770826702436345 | bayes_pls_golite062009 |
| transcription regulator activity | 0.420441899974488 | bayes_pls_golite062009 |
| double-stranded RNA binding | 0.33006862628358 | bayes_pls_golite062009 |
|
Region A: Residues: [295-418] |
1 11 21 31 41 51
| | | | | |
1 SRHFLPQIVA SPISTELKTE ETLEALDRLN LDDFYGEGRY PLRKPKSLPF FSNLEGHLDA 60
61 RWRKHPFRNQ ESTMIRLIAD NMVPRWTRDA RAAWADQRNE RMTTGVEPMP LGIGLSHVVP 120
121 KKDD
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
