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Protein Overview: CE09079

General Information:
Name(s) found: CE09079 [WormBase]
Description(s) found:
Found 19 descriptions.
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  • WBGene00008412 status:Confirmed UniProt:P90788 protein_id:CAA98115.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 586 amino acids

    Gene Ontology:
    Cellular Component: HslUV protease complex [IEALink to PubMed article]
    cytoplasm [IEALink to PubMed article]
    Biological Process: protein transport [IEALink to PubMed article]
    Molecular Function: nucleotide binding [IEALink to PubMed article]
    ATPase activity [IEALink to PubMed article]
    ATP binding [IEALink to PubMed article]
    protein binding [IEALink to PubMed article]
    nucleoside-triphosphatase activity [IEALink to PubMed article]
    HslUV protease activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHRSIGLIKL LAKPTRTAEL AAFYPNRCSC VTIRCSSSSS SGGDNGNDGG NNGENGGGDL  60
   61 TNAPPNKAVQ SFGQCRHCSK PLKPLPTLTP SNRYIHCDSC NKLYFANYFE DSAKNGMFSK 120
  121 QFARKTPPYP TQIAEYLDKF VVGQKKAKKT LAVGVYQHYR RLEHNIETGA SSIYQTHAQT 180
  181 SSSGKSLSND GMDPKMPRGV FYQDELRLGQ MASSELRNSI MQQQSNNQPP SPAQSPRNAA 240
  241 PTFRALPEKE QSVRLEKSNV LLVGPSGVGK TFLTQTLARV LDVPIALCDC TSMTQAGYVG 300
  301 EDVESVIQKL VQAAGGNVEK AQQGIVFLDE VDKIAAAHEG HSAAYRDVSG EGVQHALLKL 360
  361 VEGTVVNVKS GKKGMGSQQD QVQIDTTDIL FIASGAFSNL DKIVGRRLDK KALGFGTSSG 420
  421 NVRISGDDSN SEVMRKRDEL LSKADQGDLI SFGMVPELVG RFPVLVPFHS FDKQMLVRVM 480
  481 TEPQNSLLAQ LKLQFGIDNV DLSFSAEALE QVAQLALDRK TGARALRSIL EAALLEAKFT 540
  541 VPGSDIESVH VSREAILGEK EVEYSRRKSQ VVEEEDVSPM KKSAVA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..128] PSI-BLAST 18.39794 NMR structure of the E. coli ClpX chaperone zinc binding domain dimer
    2 View Details [129..212] PSI-BLAST 36.30103 VCP/p97
    3 View Details [213..586] PSI-BLAST 71.30103 Crystal structure of helicobacter pylori ClpX

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.270879137859077 bayes_pls_golite062009
    2 No functions predicted.
    3
    Term Confidence Notes
  • catalytic activity
    		•  0.470983068319171 bayes_pls_golite062009
  • hydrolase activity
    		•  0.0582794297634999 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.77

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle